Sequence
atgc intronic sequence ATGC exonic sequencegtaatttatctcaccaggcccaagcatgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g39850.1 (Oryza sativa), 3'ss of exon 7
gtaatttatctcaccaggcccaagcatgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
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gtaattattgaaacttgtttcatacatatttgtttgattc--ttataggtctgagcga---------tttcttgtggttagGTGAGAGAAGGCTGGAGGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTGTCTGCATTGATGAGTTTGATAAGATGAATGATCAGGACCGAGTGGCTAT
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G100639_T01 (Zea mays), 3'ss of exon 7
gtaatttatctcaccaggcccaagcatgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
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gtaaattacacaactctactta-gtgcattggtattcat----attcctgtaaaagcctcatggcgagtttttgt--tcagGGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTGTCTGCATTGATGAGTTTGATAAAATGAATGATCAAGATCGAGTTGCTAT
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G162445_T01 (Zea mays), 3'ss of exon 7
gtaatttatctcaccaggcccaa-gcatgttagcgttatt-tggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
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gtaaattacacaactctactcagtgcatgt--gcattggtgtcgtattcctgtaaaagtctcatgacaaatttctgt--tcagGGGAAAGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTCGTCTGCATTGATGAGTTTGATAAAATGAATGATCAAGACCGAGTTGCTAT
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G25980.1 (Glycine max), 3'ss of exon 7
gtaatttatctcaccaggcccaagcatgt---tagcgttatt-tggcaattgc--ttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
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gtaaatcattcgtcttgggctatatatatgcataattctattattacatctgtcatctaagcaaaaattgtaatttctttcttctagGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 7
---------------------gta-atttatctcaccaggcccaagcatgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
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gtaaatcattcgtcatgggctatatatatatatatatatatatatgcataattctattattacatctgtcatctaaggaaaaattgtaatctctttcttctagGGGAAAGAAGGCTTGAAGCTGGGGCAATGGTGCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G46280.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------gtaatttatct--caccaggcccaagcatgttagcgttatttggcaat--tgcttcagactagtattctctttcc-ttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
| |||||| | | ||| || | | | | | | | ||| | || || || | || |||||||| ||| |||| |||||||||||||| ||||| || |||||| |||| | || || ||||| |||||||| |||||||||||||| || || ||||||||
gtaaaaagcacacaaaagcgtttccacatttttttatcaaatgctaaaatcaaa-atttgaaggaaggtcaaaagtgctatttctcattaaaatcaaattctcattttcatcagGGGAACGAAGACTAGAAGCTGGTGCAATGGTCCTCGCTGATAAAGGTATCGTGTGCATTGACGAGTTTGATAAGATGAATGATCAGGACCGAGTTGCTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
ttctctttccttgtca CT-rich tract
ttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttatctcaccaggcccaagcatgttagcgttatttggcaattgcttcagactagtattctctttccttgtcatcagGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGAGGTGTTGTTTGTATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG