Sequence
atgc intronic sequence ATGC exonic sequencegtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
| | | |||| || || ||| |||| | | |||| | |||| ||| || | || | | | ||| || || || || || || |||||||||||||||||||| |||||||| ||||| || || || || ||| | ||
----------------------------------gtgagtcaactcgta--cttaca----tttaaact---aaaacctggtttgatatgcttg----cctcattt--ccatgtaaaactcttta-------catttctctgcgc----agGTGGCTTGGCAAGATCACTTTAGAGACTTACATTTCCCAGTTTCATATATGGCTAAG
upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G34410.3 (Arabidopsis thaliana), 3'ss of exon 12
gtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctc-taactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
| || || || || | | || | || | | || |||||| | || |||||||| || | | | ||||| || | ||| || || ||||| |||||||| ||| |||| || ||||||||||| || ||||||||||| ||
-------------------------------------gtatgtttctcaatctta----gtctcattctaaccaagcttagtgttttattct-----------gtacacaactctaatatgacatgactgt--catatcttcgt------agGTGGCTCGGCAAGATTACTCTGGAAACCTATATTTCTCAGTTTCACATCTGGTTAAG
upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ29067 (Selaginella moellendorffii), 3'ss of exon 12
gtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
|| | | || || | | | | | | | |||| | || || |||||||| ||||||||| | || ||||||||| | || |||||||||||| ||||
---------------------------------------------------------------------------------------gtaagtgaaatctctacttcattgcggcgga-----tgattatctgctgtcttttcg-ttacagGTGGCTTGGAAAGATCACTCTTGAAACTTATATTGCACAGTTCCACATCTGGCTGAG
upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ17601 (Selaginella moellendorffii), 3'ss of exon 11
gtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
|| | | || || | | | | | | | | |||| | || || |||||||| ||||||||| | || ||||||||| | || |||||||||||| ||||
---------------------------------------------------------------------------------------gtaagtgaaatctctacttcattgcgccgga-----tgattatctgctgtcttttcg-ttacagGTGGCTTGGAAAGATCACTCTTGAAACTTATATTGCACAGTTCCACATCTGGCTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
ctctaac putative branch site (score: 2)
cctttgt putative PPT
tagttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttctctttgatctatatgatttaagttgaatcatttgactcataacctcacaaaaatttatagtttagaaacattgttttttatatttagagataatagttaacaactctgatttctctaactgtgccacacctttgtgcttctagTTGGCTTGGCAAGATCACTTTGGAGACTTATATTTCTCAATTCCACATCTGGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA