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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcttgttcttgttcttgttttcatgagagatttattttcatcaaagaaaatttaaggtcatgttttgacttgtaacttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA

Basic information

species Vitis vinifera
transcript Vv10s0003g02590.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02590.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G18060.1 (Arabidopsis thaliana), 3'ss of exon 7
gttggttcttgttcttgttcttgttttcatgagagatttattttcatcaaagaaaatttaaggtcatgttttgacttgtaacttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA
        ||  | |||      | ||    | |  ||| || |||||||||         | |||   |||   |  || |  ||   |||||||  | || ||||||   |||||||||||||||||||| |||||| |||||| |  ||||||||| |||   |||||  | ||||||
-------gttagtattggatgaatctttcccacatcttt-ttctcatcaaag---------gctcacacttttggtcttaccgcgt---agATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045795|gb|FQ440980.1|FQ440980
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|110384739|gb|EC949198.1|EC949198
EST:     GGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAA
EST: gi|110732518|gb|EE107876.1|EE107876
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|349832459|gb|FQ421020.1|FQ421020
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|349808085|gb|FQ402476.1|FQ402476
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|110391854|gb|EC956857.1|EC956857
EST:     GGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCAT
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCAT
EST: gi|110699183|gb|EE075958.1|EE075958
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttcatcaaagaaaatttaaggtcatgttttgacttgtaacttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA
                                       ttgtaac  putative branch site (score: 2)
                                             cttgtttc  CT-rich tract
         atcaaagaaaatttaa  TA-rich tract