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...gggttcctcctcctggaactgtgtacagagagattgtacatttttcaatcaaagagatttcttagtattgcctctaatccttggaatcattgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGTCATGCTTTTGGAATGATGGCTGCTGTCCTGGTCTCCTTGATTGAG
species | Vitis vinifera |
transcript | Vv10s0003g01460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30252280|gb|CB969831.1|CB969831
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30251875|gb|CB969608.1|CB969608
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: GCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30133322|gb|CB918661.1|CB918661
genomic: GCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30252292|gb|CB969843.1|CB969843
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30252293|gb|CB969844.1|CB969844
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGEST: gi|30251886|gb|CB969619.1|CB969619
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
EST: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATG GATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
genomic: CAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatca ... tgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGG
caatcaaagagatttcttagtattgcctctaatccttggaatcattgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGTCATGCTTTTGGAATGATGGCTGCTGTCCTGGTCTCCTTGATTGAG
ctctaat putative branch site (score: 3)
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttcctcctcctggaactgtgtacagagagattgtacatttttcaatcaaagagatttcttagtattgcctctaatccttggaatcattgctatgtagGATAAAGATACCATATCCTCTTCAGTGGGGCGCACCCACTTTTGATGCTGGTCATGCTTTTGGAATGATGGCTGCTGTCCTGGTCTCCTTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - tcctcct
- - - - - - - - - - - - - agagaga
- - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttgg