Sequence
atgc intronic sequence ATGC exonic sequence...atggaagcaaggctataccgcagcagttgtttctttatataaggtcgaagattttcattttatactttcacgagggtttgaattattctttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g20410.1 (Oryza sativa), 3'ss of exon 7
atggaagcaaggctataccgcagcagttgtttctttatataaggtcgaagattttcattttatactttcacga----gggtttgaat-tattctttgttt---tgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
| | | | | | || |||| | |||| | | || ||||| | | | |||| || || | ||| |||||||||||||||||||||| ||||| ||||| || ||||| || | || | ||| | || |||||||| || || || | |||| |||
--------aggtgtggtttgtaatgcgtacttaaaattatatgaatatagatctgcgttgcctacttgtatcatcttgagtttagatgcctttgatatttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCTATCTTTCAGCTTTTGATCGCACTAAACAAGCTGAAGAA
upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G30780.1 (Glycine max), 3'ss of exon 7
------atggaagcaaggc-tataccgcagcagttgtttctttatataaggtcgaagattttcattttatactttcacgagggtttgaattattctttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
||||||| || || | | ||| || | | || | | | ||| || || ||| | ||| |||||||||||||||||||| ||||| || | |||||||||||| || | || ||||||||||| |||||||| | || ||||||||||||||
tcagtaatggaagtaaaatataagttgggatggaaattttttcaagcat-----aaattccttagttttggtttgcatttattgttg--ctgagtgttgacttgcagAGTGTTGAAGAAGCTGAGTGTCGTAAAGCTTATGATTCTGCTGCCGAGATTTATATGTCCTCTTTTGACTGTACTAAGCCTCCTGAGGAG
upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G32290.2 (Glycine max), 3'ss of exon 7
atggaagcaaggctataccgcagcagtt--gtttctttatataaggtcgaagat-tttcattttatactttcacgagggtttgaattattct-ttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
|| || ||| || | || | ||||| | ||| | || | ||| | ||| || | | ||||| | || |||||||||||||||||||| ||||| | | || |||||||| || ||||| ||||||||||| |||||||||| || || |||||||||
----ttgctagaatatgggaaagaaatttgataatattatagcatgtcatttgtgcttgacttttttgtttgctcagtactggttttattttgtttgcttgcagAGTGTTGAAGAAGCTGAGTGTCATCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCATCACCACCTGAGGAA
upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G24260.1 (Glycine max), 3'ss of exon 7
atggaagcaaggctataccgcagcagttgtttctttatataaggtcgaagatt-ttcattttatactttcacgagggtttgaattattct-ttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
| | || || | ||| | || | | || || | ||| | ||| || | | ||||| | || ||||||||||| |||||||| ||||| | | || |||||||| || ||||| ||||||||||| |||||||||| ||| ||| |||||||||
-ctagaatatgggaatgaaatt-tgataattttatagcatgccatttattcttcttgacttttttgtttgctcagtactggttttattttgtttgcttgcagAGTGTCGAAGAAGCTGAGTGTCACCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCAACGCCACCTGAGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaagattttcattttatactttcacgagggtttgaattattctttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
ttattctttgtttt CT-rich tract
attttcattttatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggaagcaaggctataccgcagcagttgtttctttatataaggtcgaagattttcattttatactttcacgagggtttgaattattctttgttttgcagAGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAA
- -gaagcaa
- - - - - - - - -ccgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg