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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT

Basic information

species Vitis vinifera
transcript Vv10s0003g00300.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 6
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
|||     || || ||  ||   |||||  ||| |     |  | ||   |    | ||     | |    |   ||||     | |  | |||| | |  |   ||||  |   ||  | ||             ||||||||||| ||||| || || ||| | ||||||||||| || || ||||| || ||||| ||||||||||| ||  | || 
gtttgtgcctcttttgtgctaatctgttgattcatcacctttttttt---tttgcctcat----gggattttgcgttgattcctgattctgtcctttctgacgttaaaaaaccattttcactg-------------ttgcagACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATC

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 7
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
                                                                         |  ||       | |||| |     |  || ||  ||   |||||||||   |   |  |   ||||||||||||||||| || || ||  | |||||||| ||||| || |||||||||||||| |||||||| || ||  | || 
-------------------------------------------------------------------------gtctgttgtttacgatttgctctcttgtcttaaccat---ccttctaatcgtt---tctggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 7
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
||||||| || | ||     |      || |   ||| | ||   ||   | |   ||| ||   |   | |  |||   |  |  || |  |   ||  | |  | |       |  || | ||| | |   ||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||| ||  | |||
gttatctcctgtgctagatata--cacttctaaatttgtgtgaatttc--tgatttacaaattactttta-tgtcttcctacta--tactgactattgctctttcata------ttattattaaataactc--tttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 7
gttatcttctattc------tgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
||||||| |||| |      | | |||     ||| ||    |||||| | |  |  |||  ||   || ||    |   ||| | |  |  || |  |   ||  | |  | |       |  || | ||| | |   ||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||| || || ||||| ||  | |||
gttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatacta--tactgactattgctctttcata------ttattattaaataactc--tttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTGTGTATACCACCTGCCGTAATT

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G46110.1 (Arabidopsis thaliana), 3'ss of exon 7
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
                                                           | |   |  |     ||  | |     ||   | ||   |      ||  ||    |||  |      | || ||||||||||||||| ||||||||||| ||| |||| ||||| || |||||||| || ||| | ||||||||||| || ||  |||| 
--------------------------------------------------------gttcttcatt--cttcccctctacattttttacgctactaaatcatgttaaggtttgatttcggaaactgtattgtgtttttgcagACTGATATGGACAGTACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G46110.3 (Arabidopsis thaliana), 3'ss of exon 7
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
                                                           | |   |  |     ||  | |     ||   | ||   |      ||  ||    |||  |      | || ||||||||||||||| ||||||||||| ||| |||| ||||| || ||||||||                                  
--------------------------------------------------------gttcttcatt--cttcccctctacattttttacgctactaaatcatgttaaggtttgatttcggaaactgtattgtgtttttgcagACTGATATGGACAGTACAAATGTCTACGCTTACATCTCCATCATC---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583035|gb|DV220554.1|DV220554
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|26265652|gb|CA816715.1|CA816715
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|110388308|gb|EC953043.1|EC953043
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|110376459|gb|EC941524.1|EC941524
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|351031379|gb|FQ445404.1|FQ445404
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|71870783|gb|DT019838.1|DT019838
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|110363008|gb|EC926573.1|EC926573
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|349813488|gb|FQ413722.1|FQ413722
EST:     CACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: CACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|110361951|gb|EC925457.1|EC925457
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|30252871|gb|CB970422.1|CB970422
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|18458226|gb|BM436504.1|BM436504
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|351048322|gb|FQ449414.1|FQ449414
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|30252957|gb|CB970508.1|CB970508
EST:     TTCTAATATCTCCTTCGA-TCACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTCTAATATCTCCTTC-ACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|34542626|gb|CF510858.1|CF510858
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|352794370|gb|FQ481601.1|FQ481601
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|33401641|gb|CF207268.1|CF207268
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|110389432|gb|EC954269.1|EC954269
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
EST: gi|351049192|gb|FQ449914.1|FQ449914
EST:     TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATG                         ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC
genomic: TTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttct ... gtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
                            ttctaat  putative branch site (score: 2)
                                              tttttgc  putative PPT
               tcaaaaatt  TA-rich tract