Sequence
atgc intronic sequence ATGC exonic sequence...tgatccagaattgacatatgtttgtagactcacactgattttataactgaggaaacatttaaagaatatcaacttaacctttaatgtttttcattttcagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G00590.1 (Glycine max), 3'ss of exon 6
---------------tgatccagaattgacatatgtttgta-gactcacactga-ttttataactgaggaaacattta-aagaatatcaacttaacctttaatgtttttcatttt--cagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
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gtagtttaccatatttcatttata-tcattaaaaaactatatggttgtcattgaatgttatatttggtactatctatataaaaacatta--tgaaccttttttgtattgtttttggacagGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGCATGTTTTATGGTTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTC
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G44710.1 (Glycine max), 3'ss of exon 5
-tgatccagaattgacatatgtt-tgtagactcacactgattttataac------tgaggaaacatttaaagaatatcaacttaacctttaatgtttttcatttt--cagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
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gtagtttatcatatatctgtatcatgaaaaaaaatggttatcattgaatgttatatttggtactatctatataaaaaca-ttgagccttttttgtattgtttttggacagGTTAGGAAACTCGAATTCTTGATTGCATTTTTAGTATTTACAATTGCTGCATGTTTTATGGTTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTC
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G02680.1 (Glycine max), 3'ss of exon 5
-----------------------------------------tgatccagaattgacatatgtttgtagactcacactgattttataactgaggaa-----acatttaaagaatatcaac--ttaacctttaatgtttttcatttt----cagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
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gtagttttctatattctatagaatctatacagccctcttccccatgggtacctggcatctttctatgatttgata-tgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacagGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgaggaaacatttaaagaatatcaacttaacctttaatgtttttcattttcagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
tgtttttcattttc CT-rich tract
atttaaagaatatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatccagaattgacatatgtttgtagactcacactgattttataactgaggaaacatttaaagaatatcaacttaacctttaatgtttttcattttcagGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - ctcacac
- - - - - - - - - - - - - - - - - - - - - - - - - ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaa