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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATCATCCAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01520.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||      | |    | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||| ||||| |
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatgg----accttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccacttgaaacacaagttcacattcatccta-taca-atgcattcttgtgtg-atggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAG
           | | |  ||  || ||||  ||   | |||| |  |   || || || ||||  |||||       |||  | ||  |     ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||| |||||||
--------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatg------gatcctactctt-----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAG
||||      ||   | |  | | || || ||    |   |||| |    | ||   || ||||    | || | |       |    | |||||||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  ||||||||| |||||||
gtattattcttttttatatgaatacaaatacaaa--aactaatgaaac--tatgatgtgtacta---ttcatttaaatggatcttgctcttgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcattcttgtgtgatggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATCATCCAG
                   gactaaa  putative branch site (score: 2)
                                      ttgcttcttcc  putative PPT
                      taaatcttatatgata  TA-rich tract