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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

Basic information

species Vitis vinifera
transcript Vv09s0054g01480.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
|| |        |||  ||  | ||   |   | |    |   ||    |    ||| |    |||    |  |  ||| |  ||| ||||| ||||| || || || |||||  |  |||||||||| || ||||||||||| ||||||| ||| |||||  | |||||||||||||| ||||||||||
gtgaaagacatcttta-attaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctat-tatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
--gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
  | |||   | ||||  |     ||| | |   | | |  ||   | |  | |  ||| |    | |  | ||||  |||||  ||  ||||| ||||| ||||| ||||||||  | |||||||| || || ||||||||||| |||||||  || || || || |||||||||||||| ||||||||||
gtgaaagacat-atttaattaatcacaatgtgtgtgtgcacatatcttttttgc-tatgaaaatgatagtcgttcat-tatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 7
----------gtaagttttgattttgtatggaacacttttccttttccgatg-aatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
           |  |  |  ||||| |||  |  |   |||   |    ||| ||| |  |    ||  |    | |   |||||  | | |   || ||||| ||||| ||||| |||||||     |||||||||||  | ||||||||||||||  |||  |||||||||||||| | | ||||||| ||||||||||
ataagagtgcatttgaataaattttttattaattaaaattcacatatatatgtaatttttttatgataaaaatgatatttattcattt-tatactttacagGAAGATCTTTACTATCCCCATCATTGGATACAAGATCTATTATGGGATAGTTTGTATGTATTCACCGAGCCTCTTCTAAATTGTTGGCCTTTCAACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT
                                  attcaaatatgtttat  TA-rich tract