Sequence
atgc intronic sequence ATGC exonic sequencegtattttttcagtaatggataatgactattcagacaatatgtcacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
-----------------------------------------gtattt-tttcagtaatggataatg-actattcagacaatatgtcacttctttggggtac----tgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
| | ||| | | || || | | | || | | | | ||| || ||| | || | | ||| |||| | |||||||| || |||||||| |||||||||||||| ||| |||||||||||| ||||| ||||||||||||||| |||||||| | |||||||
gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatgttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
-------------------gtattttttcagtaat-ggataatgactattcagacaatatgtcacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
| ||||| | | | | || |||| | || | | | || | | | || || |||||||| || |||||||| |||||||||||||||||| |||||||||||| ||||| |||| ||||||||| | |||||| |||||||||
gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaattttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-----------------------------------gtattttt-tcagtaa--tgga-----taatgactattcagacaatatgt-cacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
||| || | ||||| | | || | | || | | | | | || | | | ||| | || || || |||| || |||||||| || |||||||| ||||||||||| || ||| |||||||||||| ||||| |||||||||||||| |||||||| | |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
--gtattttttcagtaatggataatgactattcagacaatatgtcacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
| | || | | || | | | ||| | || ||| | | | ||| | || || || |||| || |||||||| || |||||||| ||||||||||| || ||| |||||||||||| ||||| |||||||||||||| |||||||| | |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaat-tcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
-----------------------------------gtattttt-tcagtaatggataatgactatt--------cagacaatatgtcacttctttggggtactgatatcgcttaaattgaa----cagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
||| || | ||||| | | | |||| || | ||| | | | |||| | || || || ||| ||||| || |||||||| || |||||||| ||||||||||| || ||| |||||||||||| ||||| ||| |||||||||| |||||||| | |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaat-gcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 4
----------------------------gtattttttcag-----taatggataatgactattcagacaatatgtcacttctttggg--gtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
| || || || | | | | | | ||| | | | || || | || | | || || ||||| | |||||||| || |||||||||||||||||| | || ||| || |||||||| ||||| ||| || ||||||| |||||||| | |||||||
gtaggtgtcataacaataatgcattaatttgattgtttagccttatgagaaaaattagtttcctcttcaagaaggaaactcattcaactatgctaaacatgtatatgtttttcagGTTCTATGTATGCTTGCTTGTTGGGTTGAAGATCCACAGGGAGATGCCTTTAAGAAGCATCTTGCAAGGGTCTCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattcagacaatatgtcacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
tactgat putative branch site (score: 2)
ttaaattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttttcagtaatggataatgactattcagacaatatgtcacttctttggggtactgatatcgcttaaattgaacagGTATTGTGTATGCTCGCATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTATATATGGGTTGCAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG