Sequence
atgc intronic sequence ATGC exonic sequencegtttttttctgcagtggataacttctatttagacaatatgtcagttctttaggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
------------------------------------------------gtttttttctgcagtggataacttctatttagacaatatgtcagttctt-taggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
|| | | | | || || | | || | | | | ||| || | | | ||| | || ||| | |||||||| | |||||||| |||||||||||||| ||| |||||||||||| ||||| ||||||||||||| | |||||||| | |||||||
gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatg-ttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
--------------------gtttttttctgcagtggataacttc-tatttagacaatatgtcagttctttaggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
| || | | | | || | ||| |||| | || | | || | || | || || || |||||||| | |||||||| |||||||||||||||||| |||||||||||| ||||| |||| ||||||| | | |||||| |||||||||
gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaattttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
------------------------------gtttttttctgcagtggataa--------------cttctatttagacaatatgtcagttctt-taggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
|||||| ||| ||| ||| |||| | | | | ||| || || ||| | ||| || || ||| || |||||||| | |||||||| ||||||||||| || ||| |||||||||||| ||||| ||||||||||||| |||||||| | |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gttt-ttttctgcagtggataacttctatttagacaatatgtcagttctt-taggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
|| | | | | || ||| |||| | | | | ||| || || ||| | ||| || || ||| || |||||||| | |||||||| ||||||||||| || ||| |||||||||||| ||||| ||||||||||||| |||||||| | |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
-------------------------------------gtttttttctgcagtggataacttctattt--------agacaatatgtcagttctttaggatactgatatg---gcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
| || | | | | | || ||||| | | ||| | || |||||| | ||| | || |||| || |||||||| | |||||||| ||||||||||| || ||| |||||||||||| ||||| ||| ||||||||| |||||||| | |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaatgcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatttagacaatatgtcagttctttaggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
tactgat putative branch site (score: 2)
acaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttttctgcagtggataacttctatttagacaatatgtcagttctttaggatactgatatggcttaagttgaacagGCATTGTGTATGCTCACATGTTGGGTTGAAGATCCAAATGGGGATTATTTCAAGAAGCACCTTGCTAGGATCCCAGATTTTATATGGGTTGCAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG