Sequence
atgc intronic sequence ATGC exonic sequencegtaatttttctgcaatggataatgtctattcagacagtatatctcttctttggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
------------------------gtaatttttctgcaatggataatgtctattcagacagtatatctcttctttggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaat----tttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtaatttttctgcaatggataatgtctattcagacagtatatctcttctt-tggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gtaatttttctgcaatggataatgtctattcagacagtatatctcttctt-tggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
--------------------------------------------gtaattt---ttctgcaatggataatgtctattcagacagtatatctcttctt-tggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
||||| | | | | || | | | | | | || | || ||| | || ||| | ||| ||||| | ||||||||| | |||||||| ||||||||||| || ||| |||||||||||| ||||| ||||| ||||||||| |||||||| |||||||
gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatg-ttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtaatttttctgcaatggataatgtctattcagacagtatatctcttctt-tggggtgctaatatggcttaaattgaat---agGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
| | | | | | || | || || | || || ||| | | | |||| ||| | | || | |||| || ||||||||| | |||||||| |||||||||||||| ||| |||||||||||| ||||| ||| | |||||||| |||||||| |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaatgcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattcagacagtatatctcttctttggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
tgctaat putative branch site (score: 2)
ttaaattgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttttctgcaatggataatgtctattcagacagtatatctcttctttggggtgctaatatggcttaaattgaatagGTGTTGTGTATGCTTTCATGTTGGGTTGAAGATCCAAACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG