Sequence
atgc intronic sequence ATGC exonic sequencegtaacacgattgtccgtattatgaaatgtttaaaagaaactctaacgaactctttcttcaattgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------------gtaacacgattgtccgtattatgaaatgtttaaaagaaactctaacg-aactctttc---ttca-attgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
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gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatgttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
-------------------------gtaacacgattgtccgtattatgaaatgtttaaaagaaactctaacgaactctttcttca---attgag----cagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
|| ||| | | ||| | | ||| || | | | ||| | | |||| || || |||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| ||||| || | ||||||||| | ||| || |||||||||
gagaaatgacaataataggagacaaaaaatgtaattaagcat-ttagtttttctacaaagagaattttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
----------------------------------------------------gtaa---cacgattgtccgtattatgaaa-----tgtttaaaagaaactctaacgaactctttcttcaattgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
||| ||| ||| | | | || || ||| | |||| | | || || ||||| || |||||| ||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| | |||||||| ||||| || | |||||||
gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaatgcatatattttttttc--cagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtaacacgattgtccgtattatgaaatgtttaaa-agaaactctaacgaactctttcttcaa---------ttgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
|| | ||| | | |||| |||||| || || | | || | | | || || |||| || |||||| ||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| | |||||||| ||||| || | |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttctagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gtaacacgattgtccgtattatgaaatgtttaaa-agaaactctaacgaactctttcttcaa---------ttgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
|| | ||| | | |||| |||||| || || | | || | | | || || |||| || |||||| ||||||||||||| ||||||||| | || ||| ||||||||||||| ||||| ||| | |||||||| ||||| || | |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttctagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtattatgaaatgtttaaaagaaactctaacgaactctttcttcaattgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
ctctaac putative branch site (score: 2)
ctctttcttcaatt putative PPT
tatgaaatgtttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacacgattgtccgtattatgaaatgtttaaaagaaactctaacgaactctttcttcaattgagcagGTATTGTGTATGTTTGCTTGTTGGGTAGAAGATCCATATGGGGATTCTTTCAAGAAGCACCTTGCTAGGCTGCCAGATTATATATGGATTGCAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG