Sequence
atgc intronic sequence ATGC exonic sequence...aatggtcattaacttctgcttccaaggaaacaagcattttcgcgggaggtttaatttgctggcattgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 6
-aatggtcattaacttct-gcttccaaggaaacaagcat-tttcgcgggaggtttaatttgctggcattgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
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cttagggcatcagttacttgcttatgccagtacttgtatattgcttgtgcatgcaaattttctagcaatacactcattggtttgcaccatgcta---tttcagGTGGAAAATGTAATAGCCCAGCTAAATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCA
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 7
-aatggtcattaacttct-gcttccaaggaaacaagcattttcgcgggaggtttaatttg-ctggcattgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
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ctaagggcatcagttacttgcttatgctggtacttgtatattgcttgtgcatgcaatttttctagcaatgcactcaatgggttgcaccatgctt---tttcagGTGGAAAATGTAATAGCCCAGCTAAATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCA
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------------aatggtcattaacttctgcttc----caaggaaacaagcatt---ttcgcgggaggttt----aatttgctggca--ttgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
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gtagatactaattttgagtttgtccaacagattttctttatatcctaactcggtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgctaactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917940|gb|CN547269.1|CN547269EST: AGTTTATTGCCCTTTCTCAAAGGACTGGTGATCCAAAGTATCAGAAAAAG GTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTG
genomic: AGTTTATTGCCCTTTCTCAAAGGACTGGTGATCCAAAGTATCAGAAAAAGgtatattcct ... gatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaggtttaatttgctggcattgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
tgctgat putative branch site (score: 3)
attgaatttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatggtcattaacttctgcttccaaggaaacaagcattttcgcgggaggtttaatttgctggcattgaatttaatgggttgaattctgctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - cattaac
- - - - - - - - -gcttcca
- - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttga