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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttctctattttatttttatttttattgttttcctttttttattttatttttatttttttttattttttatattgaaatgtatatttttctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGA

Basic information

species Vitis vinifera
transcript Vv09s0018g01270.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G039345_T01 (Zea mays), 3'ss of exon 1
ttgttctctattttattttt--atttttattgttttcctttttttattttatttttattttttttta-ttttttatattgaaatgtatatttttctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGA
 | |  | |||    ||| |  || ||  |||  ||  || ||  |  ||||  |||||       |  ||  | |  ||   ||  | ||||  | | |  |||||||| ||  |||| ||||| |||||||| |||||||| ||| ||||||||||| ||||||||||||| || || || || || ||  | ||| ||||
-tataatgtatgcagtttctgaatcttctttgagtttgttgttcaaggttatagttattaaaaagaaacttagtgttatgtggtggttcttttgttgcca--gGAAACACGCAGATGACGGTCAATAATCAAATAGCTGTTGGAACTTTGATGAATTTGGCAGATAATCCTACTAGGGTGAGCATCGGCCAGAAATGGAGAGA

upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 7
--------------------------------------ttgttctctattttatttttattttt---attgttttcctttttttattttatttttatttttttttattt--tttatattgaaatgtatattt----ttctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGA
                                       ||| |   |     ||||| ||  |   |||   |   | | | |||| | || |||    | |||  |    |  |     ||||||  |||    || |  | |||| || |||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||| ||| |||| ||||||||||||||
gtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtagGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690141|gb|EC948450.1|EC948450
EST:     GATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTG                         GAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGA
genomic: GATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatata ... tctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttttatttttttttattttttatattgaaatgtatatttttctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGA
                                         tttttctact  CT-rich tract
     ttttatttttttttat  TA-rich tract