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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgagctttttccctttcccatgccttcatttcaaccattttcccccacaagttgcagttaacgaccatttttgacaattacttaacatcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCACCCTTGTATAACCCGCTTGCCAATGTAGATGACGGGTCCTGCCCAATTG

Basic information

species Vitis vinifera
transcript Vv09s0002g06980.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G03360.2 (Glycine max), 3'ss of exon 6
gtaagtcgagctttttccctttcccatgccttcatttcaaccattttcccccacaagttgcagttaacgaccatttttgacaattactt--aacatcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCACCCTTGTATAACCCGCTTGCCAATGTAGATGACGGGTCCTGCCCAATTG
|| |||  |  || |||  ||||      ||| |  |||    || |||     |   ||    |        || || |  || | |   |||||| |||||||||||||| ||| ||||  |||||||  |||||||||||||||| ||||| | | |||| |||||||| |||||||||||||| ||  | ||  ||||||
gtgagtaaa--ttcttcaatttctttactctttaaatcattgcttctccttggaacactgtcact--------ttcttaatgatgaatgagaacatccatgcagGGTGATCGCTGCGATCTGAATTTTGTTTTAGGATGCACAGATCCTAGTTCGCACCTGTACAACCCGCTAGCCAATGTAGATGATGGAACATGTACAATTG

upper sequence: Vv09s0002g06980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G22740.1 (Glycine max), 3'ss of exon 7
gtaagtcgagctttttccctttcccatgccttca---tttcaaccattttcccccacaagttgcagttaacgacca--tttttgacaattacttaa--catcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCACCCTTGTATAACCCGCTTGCCAATGTAGATGACGGGTCCTGCCCAATTG
|| |||  |  | || |  | | | ||| ||| |   ||| ||  | |  |              |   ||   ||  || || |  || | | ||  ||||   |||||||||||| ||| ||||  |||||||  |||||||||||||||| ||||| | | | || |||||||| |||||||||||||| ||  | ||  | ||||
gtgagtata-ttcttccattcttcaatgtctttactcttttaaataatcactgtttttctccttggaacactttcagtttcttaattatgaatgaaaacatcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTCACCTATACAACCCGCTAGCCAATGTAGATGATGGAACGTGTACTATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362989|gb|EC926554.1|EC926554
EST:     ACATTGTCATCGACAGATGTGCTCTGATCGCTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|110377543|gb|EC942616.1|EC942616
EST:     ACATTGTCATCGACAGATGTGCTCTGATCGCTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|32249446|gb|CD715265.1|CD715265
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|32249285|gb|CD715104.1|CD715104
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|110363813|gb|EC927432.1|EC927432
EST:     ACATTGTCATCGACAGATGTGCTCTGATCGCTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|28961921|gb|CB340979.1|CB340979
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|27579355|gb|CB002050.1|CB002050
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|110385730|gb|EC950281.1|EC950281
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|32269789|gb|CD718948.1|CD718948
EST:     ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
EST: gi|110371008|gb|EC934697.1|EC934697
EST:     ACATTGTCATCGACAGATGTGCTCTGATCGCTAACCTGACACTGGAAGGA                         GGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA
genomic: ATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGACACTGGAAGGAgtaagtcgag ... atcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccccacaagttgcagttaacgaccatttttgacaattacttaacatcaatgcagGGTGATCGGTGCAATCTCGATTTTGTAATAGGATGCACAGATCCAAGTTCACCCTTGTATAACCCGCTTGCCAATGTAGATGACGGGTCCTGCCCAATTG
                                      acttaac  putative branch site (score: 3)
                         atttttgacaatta  TA-rich tract