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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggtagtttgtaaatttgttcactctgttcatctagccttaactttcggttttcattgtatactcaaaacaaatgcttcaaatacacaaattacagGATATGGGCAATGTCCCTCCAGCATACATCTTTGCTGCCATTATTCCTGCTTTGATGATAGCCGGGCTTTATTTCTTCGATCACAGTGTTGCTTCACAGA

Basic information

species Vitis vinifera
transcript Vv09s0002g05810.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g08020.1 (Oryza sativa), 3'ss of exon 7
-----------------------gtaatggtagtttgtaaatttgttcactctgttcatctagccttaac---tttcggttttcattgtatactcaaaacaaatgcttcaaatacacaaattacagGATATGGGCAATGTCCCTCCAGCATACATCTTTGCTGCCATTATTCCTGCTTTGATGATAGCCGGGCTTTATTTCTTCGATCACAGTGTTGCTTCACAGA
                        || |||   | || | |||| |   ||    |  |  |   ||  |     |   ||| ||| | ||  | ||   ||   ||||   |     | || |||||| ||      || |||||||||||||| |||||||||||| | || ||||||||| | || || ||||| ||||| ||||| || || ||||||||  
gtaattagtcaaacttgcttgtgatactggagatgtgaatatttatggtcttcaattttagaagtttcgcacagcttattttgcatggcatcattaa--taatatcttctctttttttattttcagGATCTGTTTTCAGTTCCTCCAGCATACATATTTGCTGCCATTCTGCCGGCTTTGATGGTTGCAGGACTTTACTTCTTTGATCATAGCGTGGCTTCACAAT

upper sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 7
------------------gtaatggtagtttgtaaatttgttcactctgttcatctagccttaactttcggttttcattgtatactcaaaacaaatgctt-caaatacacaaattac-agGATATGGGCAATGTCCCTCCAGCATACATCTTTGCTGCCATTATTCCTGCTTTGATGATAGCCGGGCTTTATTTCTTCGATCACAGTGTTGCTTCACAGA
                   | ||      ||| ||  || ||     |        |    |   |   | ||| |    |    | |     ||||||| |   |      | | | ||||| ||     ||||||||||||||| || ||||  |||||| | |||||||| ||| | || || ||||| ||||| |||||||| || ||||||||| 
gtaataagtcgcttgtttattattccgagttgcaatattattggtcgttgaagcacaaatattcatagagatttcctgcatggcatgattctgaatgctttctcttctgtgtactgccagGATTTGTTTTCTGTCCCTCCAGCATATATATTTGGAGCCATTCTGCCTGCTTTTATGGTTGCAGGACTTTACTTCTTTGATCACAGCGTAGCTTCACAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttcggttttcattgtatactcaaaacaaatgcttcaaatacacaaattacagGATATGGGCAATGTCCCTCCAGCATACATCTTTGCTGCCATTATTCCTGCTTTGATGATAGCCGGGCTTTATTTCTTCGATCACAGTGTTGCTTCACAGA
 ccttaac  putative branch site (score: 3)
                                      aaatacacaaatta  TA-rich tract