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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAGCAGCAGGACTCACTTCCCAAACATGCCACCCCAGTCCTCCTGTCCGCCG

Basic information

species Vitis vinifera
transcript Vv09s0002g04680.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G43630.2 (Glycine max), 3'ss of exon 8
gtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatt--tttaaaatttttttattgt-agGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAGCAGCAGGACTCACTTCCCAAACATGCCACCCCAGTCCTCCTGTCCGCCG
                                                                       ||| ||   |       |   |  |   |  | |      | |   |  |||   | | |||  |||    ||| ||| || | ||||||| | ||| ||||||||||| |||  |||| | ||||||||||| ||||| |||||||| ||||| ||| |||||||||| || ||  |||| || |
----------------------------------------------------------------------gtaattggttactgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGCATCAGGACTCGCTTCCAAAATATGCCACCCCTGTACTTTTGTCAGCTG

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G01750.1 (Glycine max), 3'ss of exon 8
gtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAGCAGCAGGACTCACTTCCCAAACATGCCACCCCAGTCCTCCTGTCCGCCG
                                                                   ||| |   |||    | |   | ||   ||  ||   | ||   |||   |||||   |  |  | |||   ||||| ||  || ||||||| | ||| ||||||||||| |||  |||| | ||||||||||| ||||| |||||||| ||||| ||| ||| |||||| || ||  |||| || |
-----------------------------------------------------------------gtaat-tggttgctgccgtttctgtaagtcttttaa---ttcatggttgc--catttagctgaaattgttttccattttgtt--tgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGCAACAGGACTCTCTTCCGAAATATGTCACCCCGGTACTTTTGTCAGCTG

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G79920.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAGCAGCAGGACTCACTTCCCAAACATGCCACCCCAGTCCTCCTGTCCGCCG
                                        ||    ||  ||   |||  || | |  | | ||||   ||   | |  |    || |  || ||     |||| ||  | |||| ||    || |  |||  ||       |||| ||||  ||||||||||||||||| || ||| |  |||||||  |||||||||||||| | ||||||||  ||||||| || |  ||| |||| || |
--------------------------------------gtaataattcggctcatctcgaaagcgcaga-acaaatcttaaatttcacaggc--ttgggtaaaat---ggtttgaaatgtgttttgtt---cttgtgcaatgatta------agGTTTTGAACGAGTGTGTGGAAGCAGAAGCATGGCTGCGGGAGAAGCAGCAGCAGCAGGACACGCTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245466|gb|CD711285.1|CD711285
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAA                         GTCTTGAGTGAGTGTGTGGA
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGA
EST: gi|110721835|gb|EE097540.1|EE097540
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAA                         GTCTTGAGTGAGTGTGTGGAAGCAAAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
EST: gi|110364620|gb|EC928007.1|EC928007
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAG                         GTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
EST: gi|110699605|gb|EE076751.1|EE076751
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAG                         GTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatccaattttggaacatttttttttatatttttaaaatttttttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAGCAGCAGGACTCACTTCCCAAACATGCCACCCCAGTCCTCCTGTCCGCCG
                                         tttttttatt  CT-rich tract
                aacatttttttttata  TA-rich tract