Sequence
atgc intronic sequence ATGC exonic sequence...tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 7
-tcattttttcatctagatt-gctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
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gatctattcacatttgatttaggagatgtaaacaattaagcttattt--cagcagcacatctgcaaaactttcatgatactgtatattctttgtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTAT
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 7
----------------------------------------------tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaat---atatttattt---ttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
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gtaatatattatcttcacttctgcttgcgaagaaaatacaaaactaaaaaaagagaaaaagaaatcttaacttttgttctagtggcctctaaatagacagtatccattttaaatatttttttgtggctaagaatttaattgtcttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGAAGATGCTATAACTGTGT
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 7
---------------------------------------------tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttat--ttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
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gtaatatattctcttcacttctgcttgtgaagaaaatacaaaactaaaaaaaaagaaaagaaatctttacttttgttctagtggcctctaaatagacagtatctatttaactttttttgtgctaagaatttaattgtcttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACCGATGGTTCTAAGGCTGAAGAGGCTATAACTGTGT
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
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gtaacttatactattgagatttgctttggctagctctttcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattgattttcacattccttt-ttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
tttattttt CT-rich tract
tttaattatttggttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - ctctaca
- - - - - - - - - - - - - - - - - - ggcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgt