Sequence
atgc intronic sequence ATGC exonic sequence...tactgattcctacgtggttgctcatgcagcaattatatttgattagtgattcctactagtttgctaatgcagcaattaatgtttctcgttttatgtgcagGAAGAATGTGGAAATTCCGATTCTAAAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G02070.1 (Glycine max), 3'ss of exon 8
tactgattcctacgtggttgctcatgcagcaattatatttgattagtgattcctactagtttgctaatgcagcaattaatgtttctcgttttatgtgcagGAAGAATGTGGAAATTCCGATTCTAAAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCT
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---------gtaagatgttttactttctggagagtcctttttcttgttctgttatctgctttatta------cacctg--gttgctcattctgcttgcagGAAGAATGTAGAGATTCCTATTTTGAAAGCTAGTGCAAGAATTGCAACACGACTTAATTACTTGTGTCCTCAGTTCTTTCCAGCTCCAGGATTATG----
upper sequence: Vv09s0002g04000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G43270.1 (Glycine max), 3'ss of exon 7
tactgattcctacgtggttgctcatgcagcaattatatttgattagtgattcctactagtttgctaatgcagcaattaatgtttctcgttttatgtgcagGAAGAATGTGGAAATTCCGATTCTAAAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCT
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---------gtaagatgtttttcttctggagagtccttttt-ctggttctcttacctgctttattaggattacacctg--gttgctcattctgtttgcagGAAGAATGTAGAGATTCCTATTTTGAAAGCTAGTGCAAGAATTGCAACACGGCTTAATTACTTGTGTCCTCAGTTCTTTCCAGCTCCAGGATTATGGTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgattcctactagtttgctaatgcagcaattaatgtttctcgttttatgtgcagGAAGAATGTGGAAATTCCGATTCTAAAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCT
tttctcgtttt CT-rich tract
aattaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactgattcctacgtggttgctcatgcagcaattatatttgattagtgattcctactagtttgctaatgcagcaattaatgtttctcgttttatgtgcagGAAGAATGTGGAAATTCCGATTCTAAAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCT
- -tgattcc
- - - - - - -gtggttg
- - - - - - - - - - ctcatgc
- - - - - - - - - - - - -gcagcaa