1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccactcgagccaggcctcaaggggtgttatttttgccatattcatgttttgaggcaactaatttggtgattttgattttcttttcggtttttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAGCCTTCTCTGAGGTTGTAATTCCATCAACAGGTTAAAACTTCTAATCAT
species | Vitis vinifera |
transcript | Vv09s0002g02750.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAEST: gi|30252684|gb|CB970235.1|CB970235
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAEST: gi|32457133|gb|CD798307.1|CD798307
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGAGGATGATGAGCTCGCTGCATTACGGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAEST: gi|110726760|gb|EE102823.1|EE102823
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTAACTAGAEST: gi|30297055|gb|CB973849.1|CB973849
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTA-CTAGA
EST: GATGAGCTCGCTGCATTACAGGCAGAGTTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAEST: gi|110702629|gb|EE078765.1|EE078765
genomic: GATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGATGATGATGAGCTCGCTGCATTACAAGCAGAATTGGCACTTTAAAGAC GTTCCTTTCATGGAGTAAAAGTGAEST: gi|30297117|gb|CB973911.1|CB973911
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGA
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAGTTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACAATTACTAGAAEST: gi|110715669|gb|EE093982.1|EE093982
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAEST: gi|32245304|gb|CD711123.1|CD711123
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
EST: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAG GTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
genomic: TGAGGATGATGAGCTCGCTGCATTACAGGCAGAATTGGCACTTTAAAGAGgtaattcttt ... ttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAA
gttttgaggcaactaatttggtgattttgattttcttttcggtttttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAGCCTTCTCTGAGGTTGTAATTCCATCAACAGGTTAAAACTTCTAATCAT
ttttgattttcttttc CT-rich tract
attttgattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccactcgagccaggcctcaaggggtgttatttttgccatattcatgttttgaggcaactaatttggtgattttgattttcttttcggtttttttccacagGTTCCTTTCATGGAGTAAAGGTGACAACATCAAGATTAACCATTACTAGAAGCCTTCTCTGAGGTTGTAATTCCATCAACAGGTTAAAACTTCTAATCAT
ccactcg
- - - - - - -gcctcaa
- - - - - - - - - - -gggtgtt
- - - - - - - - - - - - - - - - ttgccat
- - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcaacta