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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttttttcttttgatttttcaatttttttttccagacagatattgtttcttctaataattttctacaatattttatttcttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG

Basic information

species Vitis vinifera
transcript Vv09s0002g00880.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890328|gb|DT039383.1|DT039383
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GACGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|33409957|gb|CF215584.1|CF215584
EST:     TGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGACATAACCG
genomic: TGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|161716028|gb|FC065534.1|FC065534
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCA-TCAACAG                         GATGCCCAA-GTGCTATCA-TGACATAACCGGAA
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCGGAA
EST: gi|161705670|gb|FC055790.1|FC055790
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|110694202|gb|EE071104.1|EE071104
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGACATAAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAA-CCG
EST: gi|110696392|gb|EE072470.1|EE072470
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|351031018|gb|FQ439054.1|FQ439054
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GACGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|161707025|gb|FC055133.1|FC055133
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: gi|77582239|gb|DV220083.1|DV220083
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GATGCCCAAAGTGCTATCAATGAC
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGAC
EST: gi|110357183|gb|EC920553.1|EC920553
EST:     AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG                         GACGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacagatattgtttcttctaataattttctacaatattttatttcttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
               ttctaat  putative branch site (score: 2)
                                    ttttatttcttttgtt  putative PPT
     atattgtttcttctaa  TA-rich tract