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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaaagaaaaaacataccttctgtaatagtctggtagaggaatcatcggctactgattttacttccacttgacaaatcatcacatactttgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGCCCCATTGATTTTGGGGTTCCCATCCCTTCAAAGGTTGAGGTTGAAACAT

Basic information

species Vitis vinifera
transcript Vv09s0002g00390.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399161|gb|EC965654.1|EC965654
EST:     TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAG                         TTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
genomic: TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGgtatgttgaa ... tgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
EST: gi|110375926|gb|EC940956.1|EC940956
EST:     TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAG                         TTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
genomic: TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGgtatgttgaa ... tgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
EST: gi|110372726|gb|EC936913.1|EC936913
EST:     TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAG                         TTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
genomic: TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGgtatgttgaa ... tgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
EST: gi|46919510|gb|CN548839.1|CN548839
EST:     TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAG                         TTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
genomic: TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGgtatgttgaa ... tgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
EST: gi|110406357|gb|EC971927.1|EC971927
EST:     TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAG                         TTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC
genomic: TGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGgtatgttgaa ... tgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcggctactgattttacttccacttgacaaatcatcacatactttgctttgcagTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGCCCCATTGATTTTGGGGTTCCCATCCCTTCAAAGGTTGAGGTTGAAACAT
                                          ctttgcttt  CT-rich tract
           attttactt  TA-rich tract