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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtttctgtttctcacattttcactctctcaataaaaacttgtaacattctgtaagactgaggaagcctttgttatcagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAG

Basic information

species Vitis vinifera
transcript Vv09s0002g00380.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 6
gtaaggtttctgtttctcacat---tttcactctctcaataaaaac-ttgtaacattctgtaagactgaggaagcctttgttat-cagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAG
||||  | ||||||      ||   | |  || | | | |  ||   | | |  | | | ||    ||  |      ||  | | |||||||  || ||||  ||||| || |||||||||||||||||||| ||||| ||||||||| |||| || || || || || ||||| || ||||| ||||
gtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcagtagtttttacagttgttgtcattattactgttcagAGTTATCGATGCCATTCTTGTGAAATGCCATCAGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 7
gtaaggtttctgtttctcacattttcactctctcaataaa-aacttgtaacattctgtaagactgaggaagcctttg-ttatcagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAG
||||  | ||||||      ||    |     |   ||    |  | |  || |   |   || |  |  | | ||  || ||||||||  |  ||||  ||||| || |||||||| ||||||||||| ||||| ||||||||| |||| || || || || || ||||| || ||||| ||||
gtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 6
----gtaaggtttctgtttctcacattttc---actctctcaataaaaactt--gtaacattctgtaagactgaggaagcctttg----ttatcagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAG
    || |  ||  | ||| |    ||||        |||  || | | |||   ||| | |  | ||     | | |  ||       || |||||||| | ||||||| || || ||||||||||||||||| |||||||| ||||| |||||| ||||||||| ||| ||||| || || || ||||| | ||
gtgagttattttcttttttgttttgttttataagacatctatattacagcttcaataataattagaaacctaaatgcatgctcaaaactttttcagAGTTACAGGTGCCGGTCATGTGAGATGCCATCAGAAGCTCATGTTCACTGTTACACTCATCGACAAGGCAGCCTTACGATATCTGTCAAGAAACTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctcaataaaaacttgtaacattctgtaagactgaggaagcctttgttatcagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAG
               ttgtaac  putative branch site (score: 2)
                                          cctttgtt  putative PPT
      aataaaaacttgtaa  TA-rich tract