1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtctcttgctgtttcatagatggaaaatcctttcttatttatatttagaagttgattttattttcacttttattctgttacttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
species | Vitis vinifera |
transcript | Vv09s0002g00280.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|161715609|gb|FC068353.1|FC068353
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110693874|gb|EE070489.1|EE070489
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110730040|gb|EE106668.1|EE106668
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|294966722|gb|GW837741.1|GW837741
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|26257010|gb|CA808073.1|CA808073
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTACCAAGEST: gi|110728958|gb|EE104982.1|EE104982
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110713617|gb|EE089696.1|EE089696
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110726385|gb|EE102119.1|EE102119
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|77587429|gb|DV222858.1|DV222858
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|34543563|gb|CF511795.1|CF511795
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110732339|gb|EE107537.1|EE107537
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGEST: gi|110721123|gb|EE097761.1|EE097761
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
EST: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
genomic: CAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTgtaagtctct ... acttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
ttatttatatttagaagttgattttattttcacttttattctgttacttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
agttgat putative branch site (score: 5)
ttttcacttttattct putative PPT
tatatttagaagttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctcttgctgtttcatagatggaaaatcctttcttatttatatttagaagttgattttattttcacttttattctgttacttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA