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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttaagagattatcctgtggaactaatattttcatttggttaggatcccttggttatctaatttctcattacacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT

Basic information

species Vitis vinifera
transcript Vv09s0002g00150.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G153393_T01 (Zea mays), 3'ss of exon 7
gtgagtatttaagagattatcctgtggaactaatattttcatttggttaggatcccttg-gttatctaatttctcatt--acacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT
||  | ||  | |   || |  | |  |  |  ||        |  |||| ||   |||  ||| |  ||| ||  ||   | ||||| |||||| ||||||||||||||||||| ||| |||||| | |||| ||| || |||||||| ||
gtatg-atgcatgccttttttattttcatatcttagacatgcctcattagaatgttttgcattaacccattcctttttcttctcagGTATTTGCAGAACAACCAATTTACTGGTAATATCAATGTCTTAGCCAATCTCCCCCTTGAAACTTT

upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G330907_T01 (Zea mays), 3'ss of exon 7
--gtgagtatttaagagattatcc-tgtggaactaatattttcatttggttaggatcccttg-gttatctaatttctcat-tacacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT
   |||          |  | |     |  | ||  ||        |  |||| ||   |||  ||| |  ||| ||  | | | ||||| |||||| ||||||||||||||||||  ||| |||||| | ||||  ||||| ||||||||  |
gtatgaaatgacgcatgcctgtttactttcatctcctacacatgcctcattagaatgttttgcattaacccattccttttcttctcagGTATTTGCAGAACAACCAATTTACTGGTTATATCAATGTCTTAGCCAACCTTCCCCTTGAAACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710968|gb|EE087633.1|EE087633
EST:     ACGGGTGACCTCCCAGAAAGTTTTAGCTCCCTCTCAAGCATAACGACAAT                         GTTTTTGCAAAACAACCAGTTTACTGGTAGTATTAATGTCCTTGCCAGTCT
genomic: ACGGGTGACCTCCCAGAAAGTTTTAGCTCCCTCTCAAGCATAACGACAATgtgagtattt ... cattacacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCT
EST: gi|110712955|gb|EE088453.1|EE088453
EST:     ACGGGTGACCTCCCAGAAAGTTTTAGCTCCCTCTCAAGCATAACGACAAT                         GTTTTTGCAAA-CAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCT
genomic: ACGGGTGACCTCCCAGAAAGTTTTAGCTCCCTCTCAAGCATAACGACAATgtgagtattt ... cattacacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaatattttcatttggttaggatcccttggttatctaatttctcattacacagGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT
                                        tttctcatt  CT-rich tract
     tattttcattt  TA-rich tract