Sequence
atgc intronic sequence ATGC exonic sequence...gatttatgttgagctggattgaattctgtgtctattaagttaaggttaaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 3'ss of exon 7
gatttatgttgagctggat-tgaattctgtgtctattaagttaaggttaaatttcag----aaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
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-----acagaaaacacaatacatatgctatagttatcaatctctttccctttttttgggataacggattaatatggtgcctgatacagttgtttgatcagcacagGGTGTTCCTGATCGAGTGAACGATGAGGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTG
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G410515_T01 (Zea mays), 3'ss of exon 7
-gatttatgttgagctggattgaattctgtgtctattaagttaaggttaaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
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agatatggttttactttccatttggaatacagatggtaatatatccttctattgtttatggagccatg-tggtgcctgacacaattatttgatcagcacagGGTGTTCCTGATCGGGTGAACGATGAGGTTTTTATTGCAATGTCCAAGGCACTCAATTTCATAAATCCTGATGAGCTATCTATGCAGTGCATTTTGATTG
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G36810.1 (Glycine max), 3'ss of exon 6
gatttatgttgagctggattgaatt---ctgtgtcta-ttaagttaaggt-taaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
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catctacctcgggttgatttcactgggacagaatggaaccttgtcatggtctgtgttgcaaataatttgaaaataacaaaatgttttctcct-----tgttatagGGCGTACCTGAGCGAGTAACCGATGAGGTGTTCATAGCAATGTCGAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTG
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G00720.2 (Glycine max), 3'ss of exon 2
---gatttatgttgagctggattgaatt---ctgtgtctattaagttaaggttaaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
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tttcatctacctcaggttgatttcactgggacagaatggaaccttctcatggtctgttgca-aataattgaaaataacaaaatgttttctcct-----tattatagGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
ccaatggttttcttct CT-rich tract
tttcagaaaaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttatgttgagctggattgaattctgtgtctattaagttaaggttaaatttcagaaaaatttaaaatcaccaatggttttcttctctctctttttcagGGTATTCCTGATCGAGTAACAGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTG
- - - - - gagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaccaa