1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGATCAGATCGGATTACATCTCATTCACTGCAGGAACTGCAGCCTACAAAGAC
species | Vitis vinifera |
transcript | Vv08s0217g00020.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTGAATCATGATCTTTTACAACCATACCCTGTTTTTCATGAAAAGCCTG GTGACTATGTTGCTCACATCEST: gi|46917947|gb|CN547276.1|CN547276
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATC
EST: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTG GTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGATEST: gi|37187910|gb|CF607261.1|CF607261
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
EST: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTG GTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
ttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGATCAGATCGGATTACATCTCATTCACTGCAGGAACTGCAGCCTACAAAGAC
tatatctgtaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGATCAGATCGGATTACATCTCATTCACTGCAGGAACTGCAGCCTACAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG