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gtgagtgttctatttatggattacaggcttaaattaatcctcatgttgtatttctataatagatccatatgtttagcaattgtgtctccaatattattagaactggccatttgacttttacatgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT
species | Vitis vinifera |
transcript | Vv08s0058g01360.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATCGTGCAAGGTGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG CTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACAEST: gi|29781753|gb|CB346482.2|CB346482
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
EST: TATCGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG CTTCGGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACAEST: gi|110390350|gb|EC955254.1|EC955254
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
EST: TATCGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG CTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
catgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT
tattgac putative branch site (score: 2)
atttatatagttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttctatttatggattacaggcttaaattaatcctcatgttgtatttctataatagatccatatgtttagcaattgtgtctccaatattattagaactggccatttgacttttacatgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG