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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 6
gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
|||   | || | | |  | ||   |   |     ||  ||||  || |   |  || ||||  ||||| |||  ||| | |   |            |||      |||||||| || || ||| | |||||||| || || || ||||| ||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||||||||
gta--ctgatagtcattttaatcacaattaatgccagtgatcaattgctttctcattcattttcttttaatctg-ttatgattcaac-----------tttcactacgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 7
gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
|||   | || | | |  |  ||  |   |     ||  ||||  || |   |  || ||||  ||||| |||  ||| | |   |            |||      |||||||| || || ||| | |||||||| || || || ||||| ||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||||||||
gta--ctgatagtcgttttagttacaattaatgccagtgatcaattgctttctcattcattttcttttaatctg-ttatgattcaac-----------tttcactgcgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaa-tttgtttttattctc--cttacggtgg-tatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
|||       ||   |    | ||| ||  |    || || |    |  || | || || ||     | | | ||  ||||   ||| | |||| |||    |||     ||||||||| || || ||  | ||||||||||| ||  | ||||| || || ||||| || ||||| |||||||||||||| |||||||| ||||| ||||| ||
gtatggcgtctgcgatgtatactttttggggatcaagaaaactagagaaaattattcaaattcaaaataaatgtcagcttattttgggtttatg-atacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 7
-------------------gtaatttaattggcttactgattttatgcagcatgagca-atcagctgtta-aatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
                    |  ||    || ||| || | || |    | ||      | || ||      |||    ||    ||||  | |  ||   ||  || ||  ||  ||||||||| |||||||||||||||||||| ||||||| || ||  || | ||||| |||||||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||
gtaggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
-------------------gtaatttaattggcttactgattttatgcagcatgagcaatcagctgtta-aatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
                    |  ||     | |||||| | || |    |  |       || ||      ||||   ||   |||||  | || ||||  || |  ||   | | |  |     |||||||||||||||||||| ||||||| || ||  || | ||||| |||||||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||
gtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatc-ttacattgat-cattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
         |     | |  | ||| ||||   | |   ||||   || |||| ||   ||    || | |    ||  |       ||| ||  |  ||||   ||||||| ||||| |||||||| ||||| || ||| |||| || || || || || || ||||||||||||||||||||||| ||||| || |||||||||   ||
--------gtacttctccaaactttctgca---taatttatcaagggt-aaatcttc--ttcaagttgacttcttttctgtgtcctcatgaatgatagttttaccctgcagAACTTTTCCAGAGATTATTCAGACAGGACTTGTTGGTCGCTAGCCTTTTCCGGAATTTCTTACTTGCTGAGAGAATAATGCGGTCCGCAAACTGTAATCC

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------gtaatttaat--tggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
                        | | | |||      ||  |||    |   || || |  |   | || | || |||  | ||  | ||| || ||   |   |     ||| |  ||  ||||   |  |||| ||||| |||||||| ||||| || ||| |||| ||||| || || || |||||||||||||| |||||||| || ||||| || | ||| ||| ||||
gtacttcccaaactttccccctaatgaatcaatgcaaaattgttgacaaaaaatagtatcaagaccaaactctcaagtttg-acttcttgtttgttttctcca---ttcctcatgaa-gttagttttaccccacagAACTTTTCCAGAGATTATTCAGACAGGACTTGTTGGTTGCTAGCCTTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC
                tccttac  putative branch site (score: 2)
                                      tttatttt  putative PPT
                            tatatgcatatttatt  TA-rich tract