1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtactcttatgaattcattttcattgtttatgcctttcaaacaattgcattgcagaaactggttttatttaacaaaaactttctgttcttgctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTAGACTGGATGCTCAGCAGAGGAAGCTGAAACTTCCAGTCCTGCCAACCA
species | Vitis vinifera |
transcript | Vv08s0056g01570.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|71886245|gb|DT035300.1|DT035300
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|161708072|gb|FC055712.1|FC055712
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110429998|gb|EC996518.1|EC996518
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|32246818|gb|CD712637.1|CD712637
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|161721696|gb|FC070122.1|FC070122
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110383670|gb|EC948053.1|EC948053
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: GAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110698652|gb|EE076398.1|EE076398
genomic: GAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110402853|gb|EC963625.1|EC963625
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110688611|gb|EE067363.1|EE067363
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGANGCTGTCCAAAAAGCT GCTTCTGCTTTGAAGGGT-CTGAC-ACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110690135|gb|EE066968.1|EE066968
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|156735832|gb|EV239953.1|EV239953
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAGGGA-GTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAG-CT GCTTCTGCTTTTGA-GG-TTCTGAACACCGCCGTGCTACTGATGTGAGGGCEST: gi|33408742|gb|CF214369.1|CF214369
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTT-GAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGC
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|161721618|gb|FC070828.1|FC070828
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTEST: gi|110719746|gb|EE095143.1|EE095143
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT GCTTCTGCTTTGAAGGGTTCTGACCATCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
tgcattgcagaaactggttttatttaacaaaaactttctgttcttgctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTAGACTGGATGCTCAGCAGAGGAAGCTGAAACTTCCAGTCCTGCCAACCA
atttaac putative branch site (score: 3)
ctttctgttcttgctc putative PPT
ttttatttaacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcttatgaattcattttcattgtttatgcctttcaaacaattgcattgcagaaactggttttatttaacaaaaactttctgttcttgctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCTAGACTGGATGCTCAGCAGAGGAAGCTGAAACTTCCAGTCCTGCCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA