Sequence
atgc intronic sequence ATGC exonic sequence...ccgagcaacaaggaagaccacgcaagtatatattactacaaatgacattttttattccattgaacgtggagacatactttctctcctttttcttcaacagGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G00740.2 (Glycine max), 3'ss of exon 7
ccgagcaacaaggaagaccacgcaagtatatattactacaaatgacatttttta-ttccattgaacgtggagacatactttctctcctttttcttcaacagGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATAC
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-cacttgtgtgaaaacagcaggtctacacaatgcgttacatactttattaagtagcatgattttggttagttaagcacgtttctacttgtcactgtcatagGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCAC
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G29990.1 (Glycine max), 3'ss of exon 8
-----ccgagcaacaaggaagaccacgcaagtatatattactacaaatgacattttttattccattgaacgtggagacatactttctctcctttttcttcaacagGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATAC
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cacttgcgtgaaaacagcaggtctacacaa---tgtgttac-atagtttat-taagtagcttgattttggttagttaagcacgtttctacttgtcactgtcatagGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttttattccattgaacgtggagacatactttctctcctttttcttcaacagGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATAC
catactttctctcctt CT-rich tract
tttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccgagcaacaaggaagaccacgcaagtatatattactacaaatgacattttttattccattgaacgtggagacatactttctctcctttttcttcaacagGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATAC
- - gcaacaa
- - - - - - - - -ccacgca
- - - - - - - - - - - - - - - - - - - -aaatgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattga