Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 8
gtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
| | | || ||||| || || || | || | ||| | | | |||||| | | | || | |||| | | | | |||| | | | | || || | || ||||| ||||| ||| |||||||||| || ||||||||||||||||||||| | |
--------------------gtaatgatcaagtttctatctttttttctttttaaaaaaggacacattctttatcctgtttcttgagt---cacatgtct-tttggataattgtagtattaaggtacttgtaattctctttgccaatgatggaagcttttaatgtgccagGTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGG
upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
|| | ||| | || | || | | ||| | || | | | | ||| | |||| | ||||||| ||||| || ||||| ||||||||||| ||||||||||| || | |
-------------------------------------------------------------------------------gtaacagttcatccaaaaggcttctgattatttctttttcttacaacatttctagaaagtgaccattgtgaatctacttctct-----tagGTTGATCAACTAGTCTTTGAAGAGTTGATGCGCGAAAGATTTCCAAAGCTCG
upper sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G37290.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaa--aagttc--tgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
|||| | || | | || | || | | | ||| || ||| | | | || || ||| | | | || | | | | || || | | | | || || | || | | |||| | | || | | | ||| || | || | || | |
gtaacagttcatc-----caaaaggcttctgattatttct-----ttttcttacaacatttctagaaa-----gtgaccattgtgaatctacttctcttagGTTGATCAACTAGTCTTTGAA----GAGTTGATGCGCGAAAGATTTCCAAAGCTCGGTTCGTTATTTTCATCTGATATTCAAGTTTCTCTTCATATTTTTCTCC--------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
actaatttaatagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG