Sequence
atgc intronic sequence ATGC exonic sequence...ttttctagtgttatgacagtgtcaagtattacaattctaatttctttccctccctggtatctgtgaaagtttaagtgatttattttttcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G33710.1 (Glycine max), 3'ss of exon 7
ttttctagtgttatgac--agtgtcaagtattacaattctaatttctttccctccctgg--tatctgtgaaagtttaagtgatttattttttcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
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--cttaaggtttttgacttgctgtgaattgaaagttttcaagtttcaacagttctttgaactaattctgtgtgtttgagtaat--agtttatctataactgcagGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTT
upper sequence: Vv08s0040g02090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G36460.1 (Glycine max), 3'ss of exon 7
ttttctagtgttatgacagtgtcaagtattacaa---ttctaatttctttccctccctgg--tatctgtgaaagtttaagtgatttattttttcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
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---actaaggtttttgatttgctgtgatttgaaaggtttcaagtttcaacagttctttgaactatttctgtgtgttgaagtgat--agtttatctataactgcagGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTT
upper sequence: Vv08s0040g02090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S84_119V6.1 (Physcomitrella patens), 3'ss of exon 8
ttttctagtgttatgacagtgtcaagtattacaattctaatttctttccctccctggtatctgtgaaagtttaagtgatttattttt-------tcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
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------gcttccgtagaacagtcgtggaactct-ttcctgttcaagtcctgtctgaaaatcagcgattatttcggttatttctaatgataagagtgttatttggcagGACCACGACCTTAGAGAAGGACTTCACAGAGCTGAGCATGCCTTGAAGTTGAGCAAACGGAAGGATTGGTATAAGATTCTCGGTTTGACGAACACAGCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccctccctggtatctgtgaaagtttaagtgatttattttttcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
tttattttttcccat CT-rich tract
aaagtttaagtgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttctagtgttatgacagtgtcaagtattacaattctaatttctttccctccctggtatctgtgaaagtttaagtgatttattttttcccatgttgcagGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCAC
- - - - - - - - - - -tcaagta