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gtaaaatttatgctttaaattaactgtagctgctaacgttagaatcatttctgagtttttaacagatctagcattaattttacctttttccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG
species | Vitis vinifera |
transcript | Vv08s0040g01040.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|37188456|gb|CF607805.1|CF607805
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|349827848|gb|FQ422716.1|FQ422716
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|77583953|gb|DV221017.1|DV221017
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351043304|gb|FQ444025.1|FQ444025
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351056246|gb|FQ453708.1|FQ453708
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351055541|gb|FQ442337.1|FQ442337
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|110709191|gb|EE084434.1|EE084434
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|37189567|gb|CF608916.1|CF608916
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|110707772|gb|EE084549.1|EE084549
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351053966|gb|FQ441732.1|FQ441732
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|77583880|gb|DV220977.1|DV220977
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|71875979|gb|DT025034.1|DT025034
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGTTGGAGCTTTCGCCCAACATGGCCCTTEST: gi|110707915|gb|EE084860.1|EE084860
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAG------C---C-C--AACATGGCCCTT
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|349815813|gb|FQ400978.1|FQ400978
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|352789896|gb|FQ478711.1|FQ478711
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351040753|gb|FQ438297.1|FQ438297
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|71873082|gb|DT022137.1|DT022137
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|349826160|gb|FQ415965.1|FQ415965
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351041354|gb|FQ447481.1|FQ447481
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351040299|gb|FQ425385.1|FQ425385
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|77577309|gb|DV217367.1|DV217367
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351016501|gb|FQ423928.1|FQ423928
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|349828939|gb|FQ419272.1|FQ419272
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|349824039|gb|FQ417426.1|FQ417426
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|351023398|gb|FQ432781.1|FQ432781
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAGCATGGCCCTTTTAGACCCAGTGEST: gi|77580683|gb|DV219246.1|DV219246
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|71876799|gb|DT025854.1|DT025854
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGGTGGAGCTTTCGCCCAACATGGCCCTTEST: gi|351022732|gb|FQ428641.1|FQ428641
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAG------C---C-C--AACATGGCCCTT
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGEST: gi|71869935|gb|DT018990.1|DT018990
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTT
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTT
tcatttctgagtttttaacagatctagcattaattttacctttttccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG
ttttacctttttcctt CT-rich tract
attaattttacctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatttatgctttaaattaactgtagctgctaacgttagaatcatttctgagtttttaacagatctagcattaattttacctttttccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT