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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCAGAGTTTGACAACTTTCACGGAAACCCAA

Basic information

species Vitis vinifera
transcript Vv08s0032g01230.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 9
gtattgtggatcttttta-gtcttgagctgctgggacatgtgttttgaacttattcaacaca---tatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCAGAGTTTGACAACTTTCACGGAAACCCAA
    | || ||  |||||  | |     |       ||| | | | ||  | | |  | | |   ||||  | | ||| |  |||  |||      ||||| || ||||||||||||| ||| |||||||||   || ||||||||| | |||||||||||||| || |  ||||||||||| |||||||| ||| | || ||  |||
---gtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttt-taattatatttggacatatg-tgccagGGATTTACTTACCCTGTGGCAGAGCACTTCCTGGAAGATGTGTTGGAGAAAACTCGATACAGCATCAAGTCAGATTTTGACAATTTTGAGGGGAATTCAA

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G10180.1 (Glycine max), 3'ss of exon 7
gtattgtggatcttttta-gtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCAGAGTTTGACAACTTTCACGGAAACCCAA
    | || ||  |||||  | |     |        |  | | | ||  | | |  | | | | |  |    || |  |||  |||  ||  | ||| || ||||||||||||| ||| |||||||||   || || |||||| | |||||||||||||| || |  ||||||||||| |||||||| ||| | || ||  |||
---gtatgaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaat--tatatttggacatg-tgtcagGGATTTACTTACCCTGTGGCAGAGCACTTCCTAGAAGATGTGTTGGAGAAAACTCGATACAGCATCAAGTCAGATTTTGACAATTTTGAGGGGAATTCAA

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 7
gtattgtggatctttttagtcttgagctgctgggacatgtgttttg-aacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCA---GAGTTTGACAACTTTCACGGAAACCCAA
                           ||    |   |   |   |  |||| || |  |  |       ||||  ||   |||     |||||  |  || ||||| || || || || ||||||||||| || || |||||| |||||||||||| |||||||||||| |||||    || |  |  || | ||| || |      
------------------------gtatgtctagttgtaaatccagtgacttgtttatgatctg-----atattcgtgacttatctcttttcaacttattgccagGGTTTCACATTTCCTGTGGCAGAGTTATTCCTAGAAGATGTATTGGAGAAAAGTCGTTATAATATTAAGTCGTCTGACTCGGGGAATTATCAAGGTAGTT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352773708|gb|FQ472490.1|FQ472490
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352778146|gb|FQ468808.1|FQ468808
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352764590|gb|FQ472947.1|FQ472947
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352773574|gb|FQ472356.1|FQ472356
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352768279|gb|FQ469454.1|FQ469454
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352782101|gb|FQ470003.1|FQ470003
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAG
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCAGAGTTTGACAACTTTCACGGAAACCCAA
                    tatttatgcaatatta  TA-rich tract