1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggtttgatgtctatgttttcagtcagtccttccttcttccactttctcaattttaaagttcttaaaaatgttttcagGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAG
species | Vitis vinifera |
transcript | Vv08s0032g00440.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTGAAAAAGAAGTTCAAAGACAAGGTGGCTGAATTTCAG GTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTEST: gi|110419016|gb|EC985205.1|EC985205
genomic: TGCCTTGAAAAAGAAGTTCAAAGACAAGATGGCTGAATTTCAGgtaggtttga ... atgttttcagGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGT
EST: TGCCTTGAAAAAGAAGTTCAAAGACAAGATGGCTGAATTTCAG GTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGT
genomic: TGCCTTGAAAAAGAAGTTCAAAGACAAGATGGCTGAATTTCAGgtaggtttga ... atgttttcagGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGT
tcagtccttccttcttccactttctcaattttaaagttcttaaaaatgttttcagGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAG
tgttttc CT-rich tract
tcaattttaaagttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttgatgtctatgttttcagtcagtccttccttcttccactttctcaattttaaagttcttaaaaatgttttcagGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA