1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtcatctcaacttcagagttgtgttttcatgcttacagtagttttaacttttatgacccctggatgaataatatgcctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGAAGTGAAAGGAAAGACCGTTTTGATTCAATGTTCTCATCTCTGGTGTCT
species | Vitis vinifera |
transcript | Vv08s0007g07960.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTGTCTGAAGCAAAACCCCCTATTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|351015510|gb|FQ447339.1|FQ447339
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTTTTAGCAATTATATCTCGGCGCAGEST: gi|349825564|gb|FQ419481.1|FQ419481
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTTTTAGCAATTATATCTCGGCGCEST: gi|30297223|gb|CB974017.1|CB974017
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGC
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|352794289|gb|FQ479531.1|FQ479531
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|351028672|gb|FQ446345.1|FQ446345
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|351054628|gb|FQ456825.1|FQ456825
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCATAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCCAATAAAGAGTCAGAATCAGATCTATTAGCAATTEST: gi|110686833|gb|EE063714.1|EE063714
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATT
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTTAGGAAGAGAGGANN ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|349827514|gb|FQ422382.1|FQ422382
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|110701183|gb|EE078491.1|EE078491
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|351048863|gb|FQ431528.1|FQ431528
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAACGCAAEST: gi|351023284|gb|FQ432667.1|FQ432667
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGEST: gi|351040488|gb|FQ434621.1|FQ434621
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: CAAGTGTCTGAAGCAAAACCACCTACTAATCCTTTAAGGAAGAGAGGAAA ATCAAATAAAGAGTCAGAATCAGATCTATTAGCA
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCA
gcttacagtagttttaacttttatgacccctggatgaataatatgcctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGAAGTGAAAGGAAAGACCGTTTTGATTCAATGTTCTCATCTCTGGTGTCT
ttttaac putative branch site (score: 2)
tgccttt putative PPT
tagttttaacttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcatctcaacttcagagttgtgttttcatgcttacagtagttttaacttttatgacccctggatgaataatatgcctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAGAAGTGAAAGGAAAGACCGTTTTGATTCAATGTTCTCATCTCTGGTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA