Sequence
atgc intronic sequence ATGC exonic sequencegtaagcatattagcactggatgttgtttgaaaaattctttaatggtttcataacatgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26920.1 (Glycine max), 3'ss of exon 7
--gtaagcatattagcactggatgttgtttgaaaaattctttaatggtttcataacatgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
| || | || | | | | | || | || | || |||| || || || ||| |||| || ||| |||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||
gtttgtgctttttgcttatttggctacgtaaagaggttttctactttttgtctaacccattttattttcatg-caatagCTAAAACTTGGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCTGTTTCAGTTCAGGAAATTGGTGGTGTCAGG
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G07910.1 (Glycine max), 3'ss of exon 7
gtaagcatattagcactggatgttgtttgaaaaa-ttctttaatggtttcataacatgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
|| | || | | | | || | || | || | | |||| || || ||| || |||| || ||| |||| ||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| |||
gtttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctga-aatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTTCAGTTCAGGAAATTGGTGGTGTCAGG
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G03960.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagcatattagcactggatgttgtttgaaaaattctttaa---tggtttcataaca-----tgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
||||| | ||| | | | | | | |||| | | | ||| |||||| || | | | |||||| ||||| |||||||||||| ||||| ||| || ||||| |||||||| |||||| | ||||||||||||||||||||||| |
gtaag--tgttattaattg--gctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatcaaacagTTGAAGCTTAGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATATCGGTTGAGGAAATTGGTGGTGTGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687426|gb|EE064824.1|EE064824EST: CAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCTGTT CTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCAGTTgtaagcatat ... gtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTT
EST:
gi|110701079|gb|EE078296.1|EE078296EST: CAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCTGTT CTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTT
genomic: CAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCAGTTgtaagcatat ... gtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttgaaaaattctttaatggtttcataacatgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
tgaaaaattctttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcatattagcactggatgttgtttgaaaaattctttaatggtttcataacatgcttatttaatgtgacaacagCTGAAGCTTAGCCAGCCAAACCCAGATGATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG