Sequence
atgc intronic sequence ATGC exonic sequence...atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G07940.1 (Glycine max), 3'ss of exon 6
atagaagaa-tggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcc-cagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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gtaaaaattctccaagaaaagaagatcatcagttcatgcctaatattttgatgaatttgagataaacgcatgcaattaatcatg--tcgtgtgtgtcttcagGGTTTTGGAAATGTGGGGTCTTGGGCTGCCAAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGGGCCATCAAGAATAGCA
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26940.1 (Glycine max), 3'ss of exon 5
-atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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aatgtaaaaatgctccaagaaaagttcatcaatgcatacctaatattttgatgaatttgagacaaaatcctgcaatcaatcctgt-tgtgtgtctcttcagGGATTTGGAAATGTGGGGTCTTGGGCTGCCCAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCAGTGAGTGACATAACTGGGGCCATAAAGAATACCA
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 5
atagaagaatggatgtaa---gggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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atatatagatggtaaagaactgctcaaagaagttcttggatttagtattatgatgaatttgacataaactcatgctatatcatattgtgtttttct---ccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G16320.1 (Glycine max), 3'ss of exon 7
----atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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gtacatagatgg-taaagaactgctcaaagaagtgcttggatttagtattatgatgaatttgacataaactcatgctatatcatattgtgtttttct---ccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGATAAAGGTGGAAAAGTTGTTGTTGTCAGTGACATAACTGGAGCCATAAAGAACAGCA
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G04560.2 (Glycine max), 3'ss of exon 6
atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccatta-ttaatggatc-ttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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--agcattagctatatagatggtaaagaactgctgaaagaagttcttgaatttagtattatgatgaatttgacataaactcatatattgtgtatttcttcagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTAATAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 5
atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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----------------------gtgacctttcttttattgcggtttcctgcgagccaa--agaaacttttcttattctggtttacatattggttcattagGGATTTGGTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCGTGAGTGACATTACCGGAGCAATCAAGAACAAGG
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S62_236V6.1 (Physcomitrella patens), 3'ss of exon 6
atagaagaatggatgta-agggagaaaaacttgataaactcgataaataaatcatttatttataagc-tttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
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gttcgcaattgcaccttcatggctttgatgctcgccagtatggtatcttattcgtctgtctaagtgaattttttcatgatt--ttctattgtgatatgacagGGCTTTGGGAATGTGGGTTCTTGGGCATCGAAACTTATCCACGAAAAGGGTGGAAAAATTAAGGCTGTTAGTGATGTTACTGGAGCCATCAAGAACAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404746|gb|CF210373.1|CF210373EST: TTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAG GGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGT
genomic: TTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgacctttt ... tttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
tattaat putative branch site (score: 2)
tcttttttatccc putative PPT
atttatttataagctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagaagaatggatgtaagggagaaaaacttgataaactcgataaataaatcatttatttataagctttttccattattaatggatcttttttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGTGGAAAGATTGTTGCTGTAAGTGACATCACTGGAGCCATTAAGAATAGCA
- agaagaa
- - - - -tggatgt
- - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - -gataaac
- - - - - - - - - - - - - - - - - - - - - -aaataaa