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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttttccaatttgacattcttatgtttttggtttatgtttttctttcaccctggtctccgtatttagccaacaaaaattccatacacagGTCACCAAACCACTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAA

Basic information

species Vitis vinifera
transcript Vv08s0007g06390.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G125052_T01 (Zea mays), 3'ss of exon 5
----------gtcttttccaatttgacattcttatgtttttggtttatgtttttctttcaccctggtctccgta-----tttagccaacaaaaattccatacac--------agGTCACCAAACCACTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAA
          |   |  ||  | | | ||   | ||     ||| |  ||    ||||  |    | | | |||     | || ||| |  |||  ||| |           |||| || |||||  |  |||||||||||||||  || |||||||| || ||||| ||||| ||||| |||| |||||| |||||  |||||||||| || |
gtacaatatcgcactcgcctgtgt-atatgtgtgtgcagcgggtgtg-gtgcagcttttgcttgtgacactgtacattgtctaaccatcttaaaaaccacatgtcattttgaagGTAACAAAACCTTTGTTGGAGACATCAAGAAGAGGCTATCTTGCGGCAATTTCAGCATCGAGTTACTCCTATGTTTCATTGCTTCAGCATTTCCTTCCTA

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G05990.1 (Arabidopsis thaliana), 3'ss of exon 6
gtcttttccaatttgacattcttat--gtttttggtttatgtttttctttcaccctg-gtctccgtatttagccaacaaaaattccataca----cagGTCACCAAACCACTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAA
           |     | || |||   || ||||||   ||   |   |     ||  |        ||  | ||      |  |||        |||| | |||||| || |||||||||||||| || || ||||| || ||||| ||||| || ||||| ||||||||||| ||||| | |||||| || ||||
----------gtagagaactcgtatcgattattggttacagtaagtgcattgtgttgtatacaaactatttcctaatggtgttcacatgtgggtttagGTTAGCAAACCTCTTCTGGAGACATCAAGGAAAGGCTATCTCGCTGCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttttctttcaccctggtctccgtatttagccaacaaaaattccatacacagGTCACCAAACCACTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAA
                                   aacaaaaatt  TA-rich tract