Sequence
atgc intronic sequence ATGC exonic sequence...tagtagaagtaattttatcactttctgcagtaattttcttgttcccttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G30960.2 (Glycine max), 3'ss of exon 8
tagtagaagtaattttatcactttctgcagtaattttcttgttcccttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT
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-gtttgataaaaatgtacgagtccttttagtttatttttt-----cttaatagTAAACAAATATGCTTTGTTGATGAACCCACTGGCAAGGAGTCTAGAGGAGTTGCTGCCAGATAGAATTTCATCCTCATATTGGTGCTTCATTCTTCTTAG-----------------------------------------------
upper sequence: Vv08s0007g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G42750.1 (Glycine max), 3'ss of exon 6
tagtagaagtaattttatcactttctgcagtaattttcttgttcccttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT-
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--------------------------------gtctgctt--ttccttaactatacgcaaatatgctttgttgatgaacccattggcgagaagtctcgaagAGTTGCTACCAGATAGAATCTCAAGTACTTATCGATGTTTCATTCTTCTTAGAACAGCACTTGTTGTATCTACCGTTTGTGCTGCTTTTCTTATTCCTTT
upper sequence: Vv08s0007g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G12290.1 (Glycine max), 3'ss of exon 8
tagtagaagtaattttatcactttctgcagtaattttcttgttcccttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT
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--gtttgataaaatgtagcaatccttttagt-----ttagCTTTCCTTAATA-GTAACAAATATGCTTTGTTGATGAACCCACTGGCAAGGAGTCTAGAGGAGTTGCTGCCAGATAGAATTTCATCTTCATATTGGTGCTT----------------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT
tattgat putative branch site (score: 3)
aaacaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtagaagtaattttatcactttctgcagtaattttcttgttcccttaacatgaaacaaatatgcgttattgatgaacccattggcaagaagtatagagGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - agaagtaa
- - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccattg