Sequence
atgc intronic sequence ATGC exonic sequence...ggattctgcaataatgtccagaagaaggccagtattagactttcattgtgtatttaaattgtttagtttgcaccactaacacgtatggatgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G06820.1 (Glycine max), 3'ss of exon 7
ggattctgcaataatgtccagaagaaggccagtattagactttcattgtgtatttaaattgtttagtttgcaccactaacacgtatgga--tgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
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-ctttttgaacttgagttatcaaacgaaacatctcaatagcaagggaatgacttctggccacaacatttg-atgtctcacaagaattaactttgcaatgcagGTGATGTTCAGTACTGATGGCTATGCATTTCCTGAAACATTTTACTTAG
upper sequence: Vv08s0007g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G06810.2 (Glycine max), 3'ss of exon 9
ggattctgcaataatg----tccagaagaaggccagtattagactttcattgtgtatttaaattgtttagtt-tgcaccactaacacgtatggatgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
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-tatccttttatgatggaattataaatgaactttatgattag--tcaaatgaaacgtgtaaatcgggagataatgtctcacaagaacaaatt--ttgcattgcagGTGATGTTCAGCACTGATGCCTATACATTTCCTGAAACCTTCTACCTAG
upper sequence: Vv08s0007g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G53180.1 (Arabidopsis thaliana), 3'ss of exon 6
ggattctgcaataatgtccagaagaaggccagtattagactttcattgtgtat-ttaaattgtttagtttgcaccactaacacgtatggatgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
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---------------------------------gtaaaatttattttacttgcattatctttgttattgttcatgagtaac-cata-agatattattgcagGTTATGTTCAGCACTGATGGGTATGCATCTCCTGAGACCTACTATTTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgtatttaaattgtttagtttgcaccactaacacgtatggatgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
cactaac putative branch site (score: 1)
ttttc putative PPT
tatttaaattgtttag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggattctgcaataatgtccagaagaaggccagtattagactttcattgtgtatttaaattgtttagtttgcaccactaacacgtatggatgaattttcagGTGATGTTCAGCACTGATGGGTATGCATTTCCTGAAACTTTCTACTTAG
- - -ctgcaat
- - - - - - aatgtcc
- - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactaa