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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttatgtatttatggtcatgagtgcctgcattttccagttgcaaatatttgctttattgggcgcatgtcgattataagtttaccctttttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCAC

Basic information

species Vitis vinifera
transcript Vv08s0007g04310.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83275680|gb|DV939688.1|DV939688
EST:     TGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: TGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|71870786|gb|DT019841.1|DT019841
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|27585960|gb|CB008655.1|CB008655
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGA
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGA
EST: gi|32246344|gb|CD712163.1|CD712163
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATNTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|71868583|gb|DT017638.1|DT017638
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|110719960|gb|EE095522.1|EE095522
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGTGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|352782067|gb|FQ469365.1|FQ469365
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|30298377|gb|CB975171.1|CB975171
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|71873110|gb|DT022165.1|DT022165
EST:     CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: CCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
EST: gi|27584353|gb|CB007048.1|CB007048
EST:     AATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTG                         ATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC
genomic: AATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGgtaaccatat ... ttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttgctttattgggcgcatgtcgattataagtttaccctttttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCAC
                                   tttaccctttttgttt  CT-rich tract
                           attataagttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatttatgtatttatggtcatgagtgcctgcattttccagttgcaaatatttgctttattgggcgcatgtcgattataagtttaccctttttgttttcagATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - catgagt
- - - - - - - - - - - - - cctgcat
- - - - - - - - - - - - - - - - - - ccagttg
- - - - - - - - - - - - - - - - - - - - - -caaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtc