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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaaacttcaattatgtatatgctgaatgcaattctacgaatctcaaacttacaattttacttgtttatcttcaaaaagGTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACT

Basic information

species Vitis vinifera
transcript Vv08s0007g03920.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G34860.2 (Glycine max), 3'ss of exon 10
gtaagttcaaacttcaattatgtatatgctgaatgcaattctacgaatctcaaacttacaattttacttgtttatcttcaaaaagGTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACT
||||||| |||  | || |||| |     || ||| |  |  ||  || | ||   |  | |  |||   ||           |||| || |||||||||||||||||||| ||||||||||||||||| || || |||||  |||| |||||||| || ||||||||||||||| |
gtaagttgaaaactgaagtatgaa---attggatgaatatgaacatatttgaatagtttattgctacacatt-----------agGTGGACACAAATGTTGGACGTATAGCAGTAAGATTGGGATGGGTGCCTCTCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAATT

upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G21460.1 (Glycine max), 3'ss of exon 13
gtaagttcaaacttcaattatgtatatgctgaatgcaattctacgaatctcaaacttacaattttacttgtttatcttcaaaaagGTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACT
                    |   | ||    | ||||||  |  ||| |  ||   |     | | ||||| |  |  || | ||| || |||||||| ||||||||||| ||| || |||||||||| || || |||||  ||||||||||||| || |||||||| |||||| |
-------------------gtaagt-tgaaagaagcaattacagcaatatggaataaatctgataaattgttgacatataaca-gGTAGACACAAATGTCGGACGTATAGCAGTACGACTGGGATGGGTCCCTCTACAGCCACTGCCTGAGTCACTGCAGTTGCATCTCCTAGAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgcaattctacgaatctcaaacttacaattttacttgtttatcttcaaaaagGTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACT
                      aacttac  putative branch site (score: 2)
                                        tttatcttc  putative PPT
                             aattttacttgtttat  TA-rich tract