1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatttcttggacatctgatatgttaattttagtatttatttgggagcaaaagccttttatgtagcaatttgagtcttatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTGTTGTTGGTGTTGGTGGAAGACCCCTTACAACATTATTCAAAGGACAGG
species | Vitis vinifera |
transcript | Vv08s0007g03610.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTANGGTGCTGGAAGCTGACATTGTTEST: gi|161709350|gb|FC059679.1|FC059679
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|110380711|gb|EC945999.1|EC945999
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|110373500|gb|EC937742.1|EC937742
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|161713126|gb|FC062484.1|FC062484
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|33403613|gb|CF209240.1|CF209240
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTCTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|29784398|gb|CB345068.2|CB345068
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTEST: gi|349827863|gb|FQ422731.1|FQ422731
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAAGGATEST: gi|26264446|gb|CA815509.1|CA815509
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAA-GGAT
EST: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
gtatttatttgggagcaaaagccttttatgtagcaatttgagtcttatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTGTTGTTGGTGTTGGTGGAAGACCCCTTACAACATTATTCAAAGGACAGG
tcttatc CT-rich tract
ttttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcttggacatctgatatgttaattttagtatttatttgggagcaaaagccttttatgtagcaatttgagtcttatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTTGTTGTTGGTGTTGGTGGAAGACCCCTTACAACATTATTCAAAGGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA