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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggattctgagatacatttctgattgacctctatatcaaataaactctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG

Basic information

species Vitis vinifera
transcript Vv08s0007g02270.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 7
gtggattctgagat-acatttctgattgacctctatatcaaataaactctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG
      || |  || | |||||| | |    ||||  |||   | | ||  | |  | ||||    | ||   |||||  ||   || | ||     ||||||||||| ||||||||| | || || ||||| ||| |||||||| |||| ||||| ||||||||
-----gtcagtaatgaaatttctaact---ttctaattcaggcataatcaatgtgta-atttttttccctctgactaagctt---gcatgaaca---cagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 6
gtggattctgagat-acatttctgattgacctctatatcaaataaactctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG
      || |  || | |||||| | |    ||||  |||   | | ||  | |  | ||||    | ||   |||||  ||   || | |||    ||||||||||| ||||||||| | || || ||||| ||||||||||||  ||| ||||| ||||||||
-----gtcagtaatgaaatttctaact---ttctaattcaggcataatcaatgtgta-atttttttccctctgactaagctt---gcatgaata---cagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873418|gb|DT022473.1|DT022473
EST:     TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAG                         GCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
genomic: TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAGgtggattctg ... aatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
EST: gi|30254542|gb|CB971287.1|CB971287
EST:     TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCGGGGAGAAAAG                         GCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
genomic: TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAGgtggattctg ... aatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
EST: gi|294965055|gb|GW838858.1|GW838858
EST:     TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAG                         GCTGGGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
genomic: TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAGgtggattctg ... aatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
EST: gi|161706925|gb|FC056806.1|FC056806
EST:     TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAG                         GCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
genomic: TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAGgtggattctg ... aatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
EST: gi|110361016|gb|EC924466.1|EC924466
EST:     TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAG                         GCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG
genomic: TGGAAGATGATGTAAAGGCTTTAGAAGAGATGTACCCGCAGGGAGAAAAGgtggattctg ... aatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG
                                               tctttc  CT-rich tract
      ttttgatatttcaa  TA-rich tract