Sequence
atgc intronic sequence ATGC exonic sequence...gtgcatggatgtccattgtgcaactgttgcaaaaacaaattgtaatgatgtcaatggatcaatattgaaaactaaattgctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G100652_T03 (Zea mays), 3'ss of exon 5
gtgcatggatgtccattgtgcaactgttgcaaaaacaaattgtaatgat-gtcaatggatcaatattgaaaactaaattgctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
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--gtttacttaactaataacctatctatgtatctgtagtttcttgttcttgttaattgtaccatat--atctctcaaacggtgcatatgtttcc-----agCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G27840.1 (Glycine max), 3'ss of exon 7
----------------------------gtgcatggatgtccattgtgc-aactgttgca----aaaacaaat---------tgtaatgatgtcaatggatcaatattgaaaactaaattgctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
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gtgaactcaaacaccccttatgaagtgatttcatagctcttcgctgagttgataatagcatctgaacataagtatttttttatactacattgtcaatgcagcaattttttgt-ctaactcaattctactgtt-gatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 6
---------------------------gtgcatggatgtccattgtgcaactgttgcaaaaacaaattgta----atgatgtcaatggatcaatattgaaaactaaattg---ctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
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gtgaacatagaatccccttatctagtcttttagctatgcttaattggtaatagcatcagagaatatgtgtttcctggtatgcctactactatgcagcaaaattttgaccgagtttttctcctgttggtatccagCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G42540.1 (Glycine max), 3'ss of exon 7
-------------------------gtgcatggatgtccattgt-----gcaactgttgcaaaaacaaattgtaatgatgtcaatggatcaatattgaaaac---taaattgctttatctctt--tgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
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gtgaacataaaatccgcttatctagacttttagctattcttaattggtgacagcatttgaaaatacgcatt-tctcggtatgcctactactatgctgcgaatttttgagtaagtttttctcctgttggtatccagCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423954|gb|EC990307.1|EC990307EST: GCTGCTAGGGTAACAGCAG CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATC
genomic: GCTGCTAGGGTAACAGCAGgtcatctttt ... tgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgtcaatggatcaatattgaaaactaaattgctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
aactaaa putative branch site (score: 2)
ctttatctctttgctt putative PPT
atcaatattgaaaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcatggatgtccattgtgcaactgttgcaaaaacaaattgtaatgatgtcaatggatcaatattgaaaactaaattgctttatctctttgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG
- gcatgga
- - - - - - - - - tgcaact
- - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -caatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa