Sequence
atgc intronic sequence ATGC exonic sequence...ttggatctctgttacaattgactcggataaggatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatcaatatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G42220.1 (Glycine max), 3'ss of exon 6
ttggatctctgttacaattgactcggataaggatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatc---aatatc-tgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
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--gtctattttgtatgaacttgttaaacaaggaactatgttgtcaatggatatcatttcatttatca-catctaattttggttatggaatgtaatgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACA-
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G14780.1 (Glycine max), 3'ss of exon 7
--ttggatctctgttacaattgactcggataaggatcttttatgtgaatgcaga-cagctatgttaactaacatgcgaactcacatcaatatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
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ctatatgttttagccttaaattg-tcaaacaagtagttatattgtaaatatgtatcctttatcaaaactgatttgcgtatgtaatctgatgt--attttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G27120.1 (Glycine max), 3'ss of exon 6
--ttggatctctgttacaa-ttgactcggataaggatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatcaatatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
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ctctatgttttagccttaaatttggtcagacaaggagttatattgtaagtgtatcct-ttatcaaaactgatgtgcctatgtaatctgatgttt--tttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G17380.1 (Glycine max), 3'ss of exon 6
ttggatctctgttacaattgactcggataaggatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatc-aatatc-tgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
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-tgtctattttgtatgaacttgttaaacaagaaactatgttgtcagtgggtatcatttcattgatcg-catctaattggctatggaatgtaatgatttgcagGGACCTTTTGCCTTTTATATGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAG
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S54_186V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------ttg-gatctctgttacaattgactcggataag------gatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatca-atatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
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gtccgtggctctgtatctctacctctctttttagaacttggttgcatgtcctcttatcgcgactaatgtcgcgatccttattg-agcagcttcaaacgtgccctctagttttatgtttatatatagatagatagatagatagataag-aattacacggtgtaaatttggttcgcagGGTGCTGGAGCTTTTTACAAGGGATTTTTGCCCAATTTCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407463|gb|CF213090.1|CF213090EST: CCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGAT GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGA
genomic: CCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaat ... tgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcagacagctatgttaactaacatgcgaactcacatcaatatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
tctgtttt CT-rich tract
tatgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggatctctgttacaattgactcggataaggatcttttatgtgaatgcagacagctatgttaactaacatgcgaactcacatcaatatctgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG
- - - - ctgttac
- - - - - - - - - - - - - ataagga
- - - - - - - - - - - - - - - - - - - - - - - -gcagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcacat