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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatcccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG

Basic information

species Vitis vinifera
transcript Vv08s0007g01510.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g63060.1 (Oryza sativa), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttg--tctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
|| ||| |  | |   ||  |   |||  ||||| |  ||  |   || |  |||    || |   |   | ||   || ||   | |||||||||||| || ||  | | ||||||||| ||| |||| || ||||||||||||||||| || || || || ||||  |||||||| ||||||||  ||  
gtaagcctttcatcatttgttgggttgaatcttttgtccag-atgggtggaaaat---catctgaatttccttt---ttttttcctttgcagTTCCTCGTGGAGTGCTTTTTGGTTGTGGCGATCTGATTTTTTCATCTCACATGATCTTTACACTTGTTTTCGTGCGTACATATCATAAATATGGATCCAA

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g21180.4 (Oryza sativa), 3'ss of exon 6
gtgagcatcccgtgtgttaatcttttgtcttt-agctcatta---ctagtaggcaataaatatttatgtgctcattaagtt------gttgaatg--tgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
|| ||   ||    |||   | || ||| ||  | || || |     |   | |  || || ||| |  | |  |||||||      |||  |||  |||||| ||  | || ||||| || || || || || |||||||| ||||| |||||||| |||||| ||||||| ||  | ||||| ||||||||||| |    
gtaagagcccaccttgtagtttttctgttttccatcttatcaaattgaactgcccctatatttttcttggatacttaagtttgttttgttttatgactgcagTCCCAAGAGGAGTAATTTACGGGTGCGGTGACTTGATATTTTCATCCCACATGATTTTCACTATAGTCTTCGTTGTAACATACCAGAAATATGGAAATAT

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G169293_T01 (Zea mays), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
               || | |  | |||   | ||  | |  | || ||    || | | | |    |||   | ||| |     |||||||||||| || ||  | | ||||||||| ||| ||||||| ||||||||||||||||||||||| || ||||||| |||||| || ||||||||| |   
---------------gtaagttctctgttgctggcctactgtt-gtgggtggaaagt-tctgttgattca---aattgatc--cttgcagTTCCTCGTGGAGTGCTTTTTGGTTGTGGTGATCTGATATTTTCATCTCACATGATCTTCACTCTGGTTTTTGTGCGCACATACCATAAATATGGCTCAAA

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G004949_T01 (Zea mays), 3'ss of exon 5
gtgagcatcccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
               || | | || |||  || ||  | |  | || ||    || |     | || | ||| |    | |    |||||||||||| || ||  | | ||||||||| ||| ||||||| |||||||||||||||||||| ||||| || |||| ||| || || ||||||||| |   
---------------gtaagttttctgttgttggcctactgtt-gtgggtggaaagt-----tctgttgattcaa--atcgtccttgcagTTCCTCGCGGAGTGCTTTTTGGTTGTGGCGATCTGATATTTTCATCTCACATGATCTTCACCCTAGTTTTCGTGCGCACGTACCATAAATATGGCTCAAA

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G067036_T01 (Zea mays), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttg--tctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
|| ||  ||   | ||||  ||    |  ||| || | ||||     |    ||  |  | ||     |||  |             | |||||||||| || ||| | | ||||||||| ||||||||||| |||||||||||||| |||||||| || || || |  || || || ||||||||  |   
gtaag--tctattttgttggtcggcagattctgtatcgcattctctctgataaaccagcaatttgaatctccctt------------tccagTTCCTCGTGGGGTACTTTTTGGTTGTGGTGATTTGATATTTTCATCTCACATGATTTTCACTCTGGTTTTCGTTCGAACTTACCAAAAATATGGTTCGAA

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G147724_T01 (Zea mays), 3'ss of exon 7
----gtgagcat--cccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
    |||   ||  ||  || ||| || | ||||     |||  ||  |  || |    ||||||   || |||  ||  ||  ||  |  | |||| ||  | || || || ||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| |||||  | ||||| ||||||||||| | |  
gtaagtggtgattccctatgcgttgatatattgt-----gctacttttttttatgtc-caaatatcc-tgagcttgttctgtcatttgac-tacagTCCCAAGAGGAGTGATTTATGGATGTGGTGACTTGATATTTTCATCCCACATGATTTTCACCCTAGTTTTTGTCATTACATACCAGAAATATGGAAGCAT

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G045976_T01 (Zea mays), 3'ss of exon 7
----gtgagcat--cccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
    |||   ||  ||  || || ||| | ||||   |  ||   |    ||       ||||||        |  ||  ||  ||  |  | |||| ||    || || || ||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| || ||  | ||||| ||||||||||| | |  
gtaagtggtgattccctatgcgtcaatatattgtgcatctctttctgtatgtc-----caaatatcctgagctttgttctgtcatttgac-tacagTCCCAACAGGAGTGATTTATGGATGTGGTGACTTGATATTTTCATCCCACATGATTTTCACCCTAGTTTTCGTCATAACATACCAGAAATATGGAAGCAT

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G15850.1 (Glycine max), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttt-tgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
||||| || |  | |  || |     |||   ||  | ||  ||         |   | |||  |  ||||||      ||  |||| ||||||| || || ||  | ||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
gtgagtatacattatagtattgaaggtgttcatatttgatgcct------ttgtgtttgttttggcactcatttca--attatatgtacagTTCCGCGTGGCGTGGTCTATGGATGTGGTGATTTGATATTCTCATCACACATGATCTTTACTCTTGTCTTTGTGCTCACGTATCAGAAATATGGCACTCG

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G26700.1 (Glycine max), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttgtctttagctcattactagtaggca-ataaatatttatgtgctcatta-agttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
||||| || |      |||   | |||   || | ||||   |  |    |  ||  | |||   ||||||||  | || |   |||| ||||||| || |||||  | ||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||
gtgagtatac-----attatcgtattggagtt-gttcatatttgatgcctatgtatttgttttgttgctcatttcaattatattatgtacagTTCCACGTGGTGTGGTCTATGGATGTGGTGATTTGATATTCTCATCACACATGATCTTTACACTTGTTTTTGTGCTCACGTATCAGAAATATGGCACTCG

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G41820.1 (Glycine max), 3'ss of exon 7
gtgagcatccc---gtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
|| || || |    ||   | | |  |||  ||||  ||| ||  | ||          | ||   |||||||||  ||| || |   ||||||||| || || || |||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    |||||||| | ||| |||||  |
gttagtatactattgttcttgagttctttagctttgactcctttttggt----------tgttatggtgctcatttggtt-ttcatcatgcagTTCCACGTGGCGTGATATATGGATGTGGTGATTTGATATTTTCATCACACATGATCTTTACTCTAGTCTTTGTTAATACATATCATAGATACGGCACAAG

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G17110.1 (Glycine max), 3'ss of exon 7
gtgagcatcccgt-gtgtt--aatcttttgtctttagctcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
|| || || |  | ||  |  | |  |||  ||||  ||| ||  | ||          | |||  |||||||||  ||| || |   ||||||||| |  | ||  |||||||| || || ||||||||||| ||||| ||||||||||| ||||||||||||||    |||||||| | ||| ||||| ||
gttagtatactattgtactcgagttctttagctttgactcctttttggt----------tgttttggtgctcatttggtt-ttcatcatgcagTTCCACAAGATGCGATATATGGATGCGGTGATTTGATATTTTCATCACACATGATCTTTACTCTAGTCTTTGTTAATACATATCATAGATACGGCACACG

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G54020.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttgtctttagctcattactagtaggcaataaatatttat--------gtgctcattaagttgttgaa-tgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
           | ||  ||||| ||| || ||  || | ||| | |     |   || ||| |        ||      | |   | |||  | | |||||||||| ||||| ||||| || ||||| ||  |||| |||||||| |||||||| ||||| ||||||||||| | ||| || |||||||| ||  |   
---------gtgagttctaatcatttctccttcccttaatacaatttttggacgtatgtttcttctagttcgtatgtgatgatacgctgatcttttcagTTCCTCGTGGTGTGATATACGGATGTGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGCACTTACCAGAAATACGGTTCTAA

upper sequence: Vv08s0007g01510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G37940.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgagcatcccgtgtgttaatcttttgtc---tttagctcattactagtaggcaat-----aaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG---
|||||  | |    | ||  |||||   |     ||| |  |   ||  ||||| |        | ||||||| |||||    |   |       ||    |||  || || || ||||| || || ||  |||| |||||||| |||||||| ||||||||||||||||| |  || || ||||||||||||||      
gtgagtctactacatatttctctttccccagtcctagattgtgttta-caggcatttctttgtttgtttatgttctcatgtgatgactttgatctcatcagCTCATGGGGTGATGTATGGATGCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTACCAGAAATATGGCACTAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110417451|gb|EC983505.1|EC983505
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|161713043|gb|FC062124.1|FC062124
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|110703156|gb|EE079754.1|EE079754
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|27580938|gb|CB003633.1|CB003633
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|37188828|gb|CF608177.1|CF608177
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|110419291|gb|EC985508.1|EC985508
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
EST: gi|110428534|gb|EC995009.1|EC995009
EST:     TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATT                         TTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA
genomic: TGCTAGGCTGCCTCGTCCAGATAGTGCATTTGAAGTTCTCTTAATTAATTgtgagcatcc ... gaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattactagtaggcaataaatatttatgtgctcattaagttgttgaatgtgcagTTCCTCGGGGTGTAATATATGGTTGTGGGGATTTGATATTCTCATCTCACATGATCTTCACTCTAGTCTTTGTGCTCACATATCAGAAATATGGCACCCG
               aataaatatttatgt  TA-rich tract